Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04863 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAGACCTTATTGGAAGCTCAAAACTTGGAACTCCCAAAGCCTCAAATGCAACAACAACAGACTCAACAAACAGAGTCTTTGAAGTGCCCAAGATGTGATTCTACAAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTTTACGCAATGTCCCTGTTGGTGGTGGAAGGAAGAACAAAAGGGTCAAAAAATCCACAACCTCTACTTGCACCAACTCTGTAACTGTAACCCCTTCAATTGGTAATATGGATGGTGGATTGAGTACCCATATGACAATTCAAACTCCTCTTGTTGTTGGTGATCAAAAGAGCATGTCTTCTTCTCTCTATCAATCTCTGATTCGTCCACCATCTCTGCTTCTACAACAGAATTTGATGAATACTAGAGGCTTAGAAAGCAAAGATTTTGGCATGTTTCTGAATTCATCTTTGACTCTTCCTCAAAGCCAGAGCCTATTCTTCCCTTTCTCAACTTCAAGCTCTTTTGACACAAACCCTTGTTCATCTTCCAATGTTTATAACTATGGGGAGGAGTTTAAAACAATGGAGGAACCAACCATCAACAGTATAATGCCCACCACTGGCTGCAATAACACACAGCCATGGGAGATACCAGCAACAAGTGGTGCCATGGGAACTTCAAATTATTGGAATTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTGAAAAATCCTTGGGATGATTCTGATATCAAACCATGA 831 0.4103 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPQMQQQQTQQTESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTSTCTNSVTVTPSIGNMDGGLSTHMTIQTPLVVGDQKSMSSSLYQSLIRPPSLLLQQNLMNTRGLESKDFGMFLNSSLTLPQSQSLFFPFSTSSSFDTNPCSSSNVYNYGEEFKTMEEPTINSIMPTTGCNNTQPWEIPATSGAMGTSNYWNWEDIDSLVSTDLKNPWDDSDIKP. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04863 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 200 IPR045174 GO:0003700|GO:0006355
Seca12g04863 276 Pfam Dof domain, zinc finger 42 95 IPR003851 GO:0003677|GO:0006355
Seca12g04863 276 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Seca12g04863 276 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04863 Seca-Chr12 132961889 132962803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04863 28 120 C2C2-Dof Transcription Factor Family AT5G60200 57.895 2.88e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g04863 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04863 - - gmx:100818111 361.688