Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04844 ATGGATGCCTCTGTCTCCGTTCTGGACGTGGAAGATGTCGGTGGCTGCATGAGACACAAACCAAAGGATTGGTCATGCTTTTCCCTAACTTTATGCTCTTTATGTGGTGCTTTGGTTATGGGTTTCCTTCTTGTGGATAACTCTAGTTTTCAAGCAACTTTCATTTGTTTTGTTAGAAATATAAAAGGTACTATATATGAATTGGGCCCAAATGATCCTTCCTATGGTTCCAATTTCTATGACTGTTGTGGGGTTGGAGACCCTGAATTACTTGAGGGACAGCCAACCGGGAACCTCTGTTTATCAGGTGAGATCACCCTTCTTCGCCAAAACCACCACTATTGCAGCAAGATGAGTTTATTTTTACCACCAGTTGAGAATATTGGCGCCAAGTTGGTGAGACAGGCAGCTGCCAAGACAAATGACTTGGCTCGTGATGGAACCACGACCTCTGTTGTTCTAGCCCATGGTCTTATTGCAGAAGGTGTAAGGTTGTTGCAGCTGGTGCCAACCCCGTTCTTATCACCAGTGGCATTGAGAAAACAACAAAGGACTACAGTTTGGTCCTGGAGTTTTTGTGCTGGAGGGAATCTAGCTTCTTATATTCGACGCCATGGGAGAGTTCAACAACAATTGGCCAGAAAATTCATGCAGCAACTTGGCTCTGGTCTAAAGGTATTACACTATCGAGGCATCATTCACAGGGACTTGAAACCAGAGGGCAAAAATCAGCGTGATCTGTGCTTCATCTTGCGCTACAGCGCAGCTTGCAGTGCAGAAGTCAGAGAGCTGCGCTTCACCCTACGCTGCAGCGCAGGTTTTGCTGACAGAACAGTGAAATTTTGGGATTTAGAAACCTTTGAACTGATTGGATCCACCAAACATGAGGTTGCTGGAGTATGCTCAATAGCTTTTCATCCTGATGGACGGACCCTGTTTGCTGGACTTGAGGATAGTTTGAAGGTGTATTCATGGGAATCTGTTATATGTCACGATGCTATTGATATGGGATGGACAACACTTGGTGACCTTTGTATTCATGAGGGGAAGCTTTTAGGCTTGGCTGACATTAGTGTCACAGATTGTGTCAAGTTCCTATATTTGATAACTTTGGTGTTTCTGGCAAGTCACGGATTGTGTCAAGTTCCTATCTTTGATAGCTTTGATGCTTCCAATAGAAACATCCAAGGCTTACAAAGTTTACACTCTAGAACCTTGACAGTAGAAGAATCTACTCATGTTAGATTTAATGATGCTAAAGAGACTGATAGGGAACTATCATATCTAGAAGAGGATTTTGCAGGTATGGAACTGAACCCTACTTCAGAGACTCCAGAAGCCAAGAAAGAAGCACCTGCTGAAGGACCCTATGAAGTACCTGCTGAACAAACTTCCAGTCAACCTGCTGAAAATGATCCTCCTCACAGAGTTAATGTTGAGTCTCAGAATGAGCAAGTATTCCCTCGAATGCATGAGTGGAGATATAGAACTCATCATCCTCGAGAGCAAATCATTGGTGATACTTCAGAAGGAGTAAGAACAAGATCAAGACTTAGAGAAGTCAATAATCTTGCCTTCCTCTCTGAAATTGAGCCAAAGAATATTGAGGAAGCTTTGCATGATGAAGGGTGGATCCTAGCCATGCAAGAAGAGCTTAATCAATTTGCCAGGAGTGATGTCTGGACTGTTGTTCTTAAACCTCATGGGAAAACTATTATTGGAACCAAATGGGTGTTTAGAAACAAACTCTCTAAAGATGGTCAAGTGGTCAGAAACAAGGCTAGATTGGTTGCACAAGGCTATAATCAACAAGAAGGTATTGACTTTACTGAAACTTTTGCTCCAGTAATGGCATCAAACTATATCAAATGGATATAA 1878 0.4271 MDASVSVLDVEDVGGCMRHKPKDWSCFSLTLCSLCGALVMGFLLVDNSSFQATFICFVRNIKGTIYELGPNDPSYGSNFYDCCGVGDPELLEGQPTGNLCLSGEITLLRQNHHYCSKMSLFLPPVENIGAKLVRQAAAKTNDLARDGTTTSVVLAHGLIAEGVRLLQLVPTPFLSPVALRKQQRTTVWSWSFCAGGNLASYIRRHGRVQQQLARKFMQQLGSGLKVLHYRGIIHRDLKPEGKNQRDLCFILRYSAACSAEVRELRFTLRCSAGFADRTVKFWDLETFELIGSTKHEVAGVCSIAFHPDGRTLFAGLEDSLKVYSWESVICHDAIDMGWTTLGDLCIHEGKLLGLADISVTDCVKFLYLITLVFLASHGLCQVPIFDSFDASNRNIQGLQSLHSRTLTVEESTHVRFNDAKETDRELSYLEEDFAGMELNPTSETPEAKKEAPAEGPYEVPAEQTSSQPAENDPPHRVNVESQNEQVFPRMHEWRYRTHHPREQIIGDTSEGVRTRSRLREVNNLAFLSEIEPKNIEEALHDEGWILAMQEELNQFARSDVWTVVLKPHGKTIIGTKWVFRNKLSKDGQVVRNKARLVAQGYNQQEGIDFTETFAPVMASNYIKWI. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04844 625 MobiDBLite consensus disorder prediction 460 477 - -
Seca12g04844 625 MobiDBLite consensus disorder prediction 436 477 - -
Seca12g04844 625 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 559 623 IPR013103 -
Seca12g04844 625 Gene3D - 246 470 IPR015943 GO:0005515
Seca12g04844 625 SUPERFAMILY Protein kinase-like (PK-like) 192 240 IPR011009 -
Seca12g04844 625 Gene3D - 124 167 IPR027413 -
Seca12g04844 625 SUPERFAMILY GroEL equatorial domain-like 123 172 IPR027413 -
Seca12g04844 625 Gene3D Transferase(Phosphotransferase) domain 1 185 241 - -
Seca12g04844 625 Pfam Protein kinase domain 191 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04844 625 SUPERFAMILY WD40 repeat-like 272 339 IPR036322 GO:0005515
Seca12g04844 625 PANTHER KATANIN P80 SUBUNIT 272 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04844 Seca-Chr12 132237374 132246434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04844 271 353 Miscellaneous Gene Families AT5G08390 57.831 5.99e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Seca12g04844 RVT_2 3.6e-15 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04844 - - psat:127109917 182.185