Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04829 ATGGGTACTGCTAGGGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAGGCTAGCAACGTACTACTTGACAGAAACTTTAATCCAAAAATAGGAGATTTTGGGTTGGCTAAACTATTTCCAGATGACATCACTCACATTAGCACGAGAATTGCTGGAACAACTGGCTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTGTACTTGAAATAATTAGTGGCAAAGGCAGTTCAAGGACAAACTGGGGAGGGTCAAACAAATTCCTCTTGGAATGGGCCTGGCATCTTCATGAAGAGGGGAGACTGTTGGAGCTTGTGGATCCAGACTTGGTTGAATTTCCTGAGGAAGAGGTAATTAGGTACATGAAGATAGCTTTTTTCTGCACACAGGCAGCAGCAAGCAGAAGGCCCTTAATGTCCCAAGTTGTTGATATGCTCTCTAAGAAAATCAGGCTCAATGAAAAGCAACTCACAGCACCAGGGTTCTTCCAGGATTCAGGAACATCCTCTCAAAAGAAGTCATCTTTTGAGTCCACAAGCTATCAATTTAGCTCTGCCCCTGCCAGTATTACTCAGGTCACCCCACGGTGA 651 0.4439 MGTARGLAFLHEELVPHIVHRDIKASNVLLDRNFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLVLEIISGKGSSRTNWGGSNKFLLEWAWHLHEEGRLLELVDPDLVEFPEEEVIRYMKIAFFCTQAAASRRPLMSQVVDMLSKKIRLNEKQLTAPGFFQDSGTSSQKKSSFESTSYQFSSAPASITQVTPR. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04829 216 SUPERFAMILY Protein kinase-like (PK-like) 2 195 IPR011009 -
Seca12g04829 216 SMART serkin_6 3 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04829 216 Gene3D Transferase(Phosphotransferase) domain 1 1 183 - -
Seca12g04829 216 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04829 216 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 178 - -
Seca12g04829 216 MobiDBLite consensus disorder prediction 183 216 - -
Seca12g04829 216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Seca12g04829 216 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 197 - -
Seca12g04829 216 Pfam Protein kinase domain 3 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04829 Seca-Chr12 131925269 131929988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04829 1 206 Receptor kinase-like Gene Family AT1G56120 51.675 9.24e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04829 Pkinase 8.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04829 - - gmx:100788143 389.808