Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04804 ATGGCTGAAAATGTGTTGGAGCTCAACCTTGGTTTAGGGAACTTTTCTGGTCATTCAGGACAGTCCCCTAGGCCAAGGTGCCCTGCACCATTTCTGTTAAAGACCTATGATTTGTTGGAAGAAGGTGAGGTGGATGGTGCAGCTGAAGATGGCACTAAAATTGTGTCATGGAATGCTGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTCAAGCACAACAATTTCTCTAGCTTCATTCGCCAATTGAATACATATGGATTTAAGAAAACCTCATCTAAAAGATGGGAATTCAAGCATGAGAAATTTTTGAGAGGTTGCAGGCATATGCTAGTTGAAATAACGAGGAAAAAGTGCGAGCCTAGTGTGTTTCCTACATATCTCAAGTCTTCTTCAGAGGAAAATGCAATGACTAATTCAATGGAAGAAAACAATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTGGAGCTTCAAATGCAGATAGCTGAATGCAAAGCAATAGAAATGAAGTTGTTGGAGTGTCTCTCTCAATTTATGGACAACCACCAAAATAAAGTTAGGAGACAATGTTAA 621 0.3994 MAENVLELNLGLGNFSGHSGQSPRPRCPAPFLLKTYDLLEEGEVDGAAEDGTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFKHEKFLRGCRHMLVEITRKKCEPSVFPTYLKSSSEENAMTNSMEENNHQLLMEENKNLKKERLELQMQIAECKAIEMKLLECLSQFMDNHQNKVRRQC. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04804 206 SUPERFAMILY "Winged helix" DNA-binding domain 28 127 IPR036390 -
Seca12g04804 206 FunFam Heat stress transcription factor A-6b 24 128 - -
Seca12g04804 206 Gene3D - 25 128 IPR036388 -
Seca12g04804 206 Pfam HSF-type DNA-binding 31 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g04804 206 Coils Coil 149 183 - -
Seca12g04804 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 181 IPR027725 -
Seca12g04804 206 SMART hsfneu3 27 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04804 Seca-Chr12 131614131 131617063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04804 19 195 HSF AT5G62020 35.885 1.31e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g04804 HSF_DNA-bind 1.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04804 K09419 - gmx:100789792 332.413