Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04803 ATGGCGAGTCGGTTCGGTTCTTCTTCCTCCGGTTCGACATCGTTGAAAGTGACCAACACGCCCTCGCAGGAACTCGCTCTCACCAACCTCGCCTTCTGTTCCCCTTCCGATCTTCCCAAATTCGCCGTCCCCGGTCACACCGACTTCTACCTCGCTCAAGTCGCCGATTCCTTCATCTTCTCTATCTCATGTCATGCAAGCATACAGAATGGCCATATCGCGTTGAATTCCATTCAACGTCGGTGGGCCAAAGTTTCTACTGGTGAATCCATACCTGTGAGCCGATTCGTGCCGCCTGAGAACTTCAACCTGGCACTGCTAACCCTTGAATTGGACTTCATTAAAAGGGTTGGAAACAGGAGTGAACAGATTGATGCGGTTCTACTGGCTAAGCAAATTCGGAAGAGATTTTTAAACCAGGTAATGACAGTAGGGCAGAAAGTGTTGTTTGAACATCATGGAAATAATTATAGCTTTACAGTCAGTCAAGCAGCTGTTGAGGGCCAAGAAAAGTCAAATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTCGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGTCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCCCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGTACTGGAAAGACCCTTATGGCTCGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTCAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGAACAGAGGACCAGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACCGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACAAAGATAGATGGTGTGGAGTCACTAAATAATGTGTTACTTATTGGAATGACTAACAGAAAGGACTTGCTTGATGAAGCTCTCTTGAGACCAGGGCGGTTGGAAGTCCAGGTGGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTCAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGCGTTGTGAAAAGTGCTGTTTCATATGCTTTGAATAGACAATTGAGTCTAGAAGATCTTACTAAGCCAGTGGAGGAAGAGAATATTAAGGTCACGATGGATGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGACCTTGAAAGATGCAGACTCCACGGCATGGTGGACTGTGGTGATCGACATAAGCACATTGCTCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCACTTGCAGCTACAGTTGGTATTGAGAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCTATGATTGGTCTACATGAGAGCACTAAATGTGCACAAATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGCGTTATTATTCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTTGTCCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAGCTCATGGTTATTGGTACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTGAACACAGATGATGCAAAGAAGGTCCTAAAACAGTTGAACGTTTTTGCTGATGAAGATGTTGATTCTGCAGCAGAGGCCTTGAATGATATTCCTATAAGGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGAGCACAAGGCGGATCTGCAGAAGCTATCTATTCTGGCAGAGAGAAGATGAATATATCTCATTTCTATGATTGCCTTCAGGATGTTGTCAGAATATAA 2238 0.4285 MASRFGSSSSGSTSLKVTNTPSQELALTNLAFCSPSDLPKFAVPGHTDFYLAQVADSFIFSISCHASIQNGHIALNSIQRRWAKVSTGESIPVSRFVPPENFNLALLTLELDFIKRVGNRSEQIDAVLLAKQIRKRFLNQVMTVGQKVLFEHHGNNYSFTVSQAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIAQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIESDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTDDAKKVLKQLNVFADEDVDSAAEALNDIPIRKLYMLIEMAAQGAQGGSAEAIYSGREKMNISHFYDCLQDVVRI. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04803 745 FunFam Vesicular-fusion ATPase SEC18 210 400 - -
Seca12g04803 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 714 IPR027417 -
Seca12g04803 745 Pfam AAA+ lid domain 425 480 IPR041569 -
Seca12g04803 745 CDD RecA-like_NSF-SEC18_r1-like 221 397 - -
Seca12g04803 745 FunFam Vesicle-fusing ATPase 100 198 - -
Seca12g04803 745 FunFam Vesicle-fusing ATPase protein 12 96 - -
Seca12g04803 745 Gene3D - 209 399 IPR027417 -
Seca12g04803 745 Gene3D - 400 487 - -
Seca12g04803 745 Pfam Cell division protein 48 (CDC48), domain 2 123 184 IPR004201 -
Seca12g04803 745 SMART AAA_5 534 672 IPR003593 GO:0016887
Seca12g04803 745 SMART AAA_5 254 401 IPR003593 GO:0016887
Seca12g04803 745 FunFam vesicle-fusing ATPase isoform X1 496 667 - -
Seca12g04803 745 Gene3D - 99 198 - -
Seca12g04803 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Seca12g04803 745 PANTHER VESICULAR-FUSION PROTEIN NSF 13 744 IPR039812 GO:0016887|GO:0035494
Seca12g04803 745 Gene3D - 10 96 - -
Seca12g04803 745 SUPERFAMILY Cdc48 domain 2-like 99 203 IPR029067 -
Seca12g04803 745 Pfam ATPase family associated with various cellular activities (AAA) 539 652 IPR003959 GO:0005524|GO:0016887
Seca12g04803 745 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
Seca12g04803 745 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Seca12g04803 745 SMART CDC48_N_2 14 99 IPR003338 -
Seca12g04803 745 Gene3D - 496 667 IPR027417 -
Seca12g04803 745 SUPERFAMILY ADC-like 12 96 IPR009010 -
Seca12g04803 745 FunFam Vesicle-fusing ATPase 400 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04803 Seca-Chr12 131589970 131601375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04803 159 473 Calmodulin-binding Proteins AT3G56690 29.338 1.92e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04803 K06027 - gmx:100779259 1296.95