Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04795 ATGCAAACTGAAGAGCTAAAGAAAGAAGAAGACGATGATGGCCCACCACCAGGGTGGCAGCCCATACTCCCTCCGACACCAGCACCGCCACCGCCACCGCCACGTCCATCCGGTTTAGCTCAAATGGTTTGTGGTTCTTGTCGTCGCCTTCTCTCATATCCACAAGGTGCCAAACATGTCAAATGTTCGTGCTGTCAGACAGTTAATATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGAAATTGTGCGATATTGCTAATGTACCCATATGGTGCTTCGCAAGTTAGGTGTTCCTCATGCCAGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCCCCATGGTCTGTACAACAAAAGAAACCAACTCCTACCAAAACTGGTTGTTAG 399 0.4837 MQTEELKKEEDDDGPPPGWQPILPPTPAPPPPPPRPSGLAQMVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLEADQVGQVKCGNCAILLMYPYGASQVRCSSCQFVTEIGAHNKRPPWSVQQKKPTPTKTGC. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04795 132 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g04795 132 Pfam LSD1 zinc finger 44 68 IPR005735 -
Seca12g04795 132 Pfam LSD1 zinc finger 82 106 IPR005735 -
Seca12g04795 132 PANTHER PROTEIN LSD1 14 129 IPR040319 -
Seca12g04795 132 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g04795 132 MobiDBLite consensus disorder prediction 17 38 - -
Seca12g04795 132 NCBIfam zinc finger domain, LSD1 subclass 41 71 IPR005735 -
Seca12g04795 132 NCBIfam zinc finger domain, LSD1 subclass 79 107 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04795 Seca-Chr12 131419799 131423875 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca12g04795 zf-LSD1 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04795 - - gmx:100780865 230.72