Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04780 ATGGATGAATCCAGCAGCAATTCTTGGATAAGAAGGACGAAATTCTCTCACACAGTGTGTCATCGATTGGATTATTCCAGATTAGGTTCTCTTAGCATTCAGCCAGGGACAGTGCAAAGGTCTGGTCTGAAATCAAGGCCTGCAGCAGCTCCTGTTGTATCTAAGGTTGAACAGGTTCAGAAGAATCCCATAACCAACAAGCAGAGATCTTTGTCTCCTTTGCCTGTGACATCTATCTCTGAAACCTTTAAGGAAGCCAGGCATGAACAGAAGAGGTTCTCAACTCCAGGTCCAAGGAGGAAAGAGCAGGATAAGAGAATCATGGGGAAGCTACTGAACAAGGATTCTCAAGTGTCCAATTCTAAATCACCTTACAGTAGTCCAATTAGGCACTTTGCATCAATGAAATTAGGTGACAAGTCCAAGAACCGCAAGGACTCAGGATGGACAAAGTACTTTGACCATGGTGGAGGAAAGGTTACTGCTGTGGAAACAGCTGAGGAATGGAATATTGACCTCTCTAAGCTCTTTGTTGGTGTTAGATTTGCTTATGGAGCTCACAGTAGGCTTTACCATGGTGTGTATAAGGATGAACCAGTTGCTGTGAAAATTATTAGGGTGCCAGATGATGACGAAAATGGAACGTTGGCTGCTCGATTGGAGAAACAGTTCATTAGAGAAGTCACACTTTTATCTCGCCTCCACCATCAAAATGTTATAAAGTTCGTAGCAGCATGCAGAAAGCCCCTTGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTAAGGGCATATTTGCATAAGTTGGAGAGAAAAACTATTTCTCTACAAAAGCTTATTGCTTTTGCTCTGGATATTGCTCGCGGAATGGAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATGTCCTTATTAATGGAGACTTTCGGCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGCGACTTACTTGCTGATGACCCTGGTACCTACCGCTGGATGGCGCCTGAGATGATCAAACGAAAATCCTATGGGAGGAAGGTTGATGTATATAGTTTTGGGCTTATCTTATGGGAAATGGTGGCTGGGACAATACCATATGAGGATATGACTCCCATACAGGCCGCTTTTGCGGTGGTAAATAAGAATTCAAGGCCTGTTATTCCTTCAAATTGCCCACCTGCTATGCGAGCTTTAATTGAGCAGTGTTGGTCATTGCATCCAGACAAAAGGCCTGAGTTCTGGCAAGTTGTTAAGGTATTAGAGCAATTTGAATCTTCACTTGCTCGTGATGGAACCCTGACCCTGGTGCAAAACCCGTGTTGCCAAGATCACAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTAGGTCCTTCGCATCAAAACAGTGGTCCTGTGCCTAAACCTAAATTTACATGA 1452 0.4291 MDESSSNSWIRRTKFSHTVCHRLDYSRLGSLSIQPGTVQRSGLKSRPAAAPVVSKVEQVQKNPITNKQRSLSPLPVTSISETFKEARHEQKRFSTPGPRRKEQDKRIMGKLLNKDSQVSNSKSPYSSPIRHFASMKLGDKSKNRKDSGWTKYFDHGGGKVTAVETAEEWNIDLSKLFVGVRFAYGAHSRLYHGVYKDEPVAVKIIRVPDDDENGTLAARLEKQFIREVTLLSRLHHQNVIKFVAACRKPLVYCVITEYLSEGSLRAYLHKLERKTISLQKLIAFALDIARGMEYIHSQGVIHRDLKPENVLINGDFRLKIADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVAGTIPYEDMTPIQAAFAVVNKNSRPVIPSNCPPAMRALIEQCWSLHPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNPCCQDHKKGLLHWIQKLGPSHQNSGPVPKPKFT. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04780 483 Gene3D Phosphorylase Kinase; domain 1 164 260 - -
Seca12g04780 483 SMART serkin_6 176 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04780 483 Pfam Protein tyrosine and serine/threonine kinase 184 432 IPR001245 GO:0004672|GO:0006468
Seca12g04780 483 Gene3D Transferase(Phosphotransferase) domain 1 261 459 - -
Seca12g04780 483 ProSiteProfiles Protein kinase domain profile. 176 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04780 483 SUPERFAMILY Protein kinase-like (PK-like) 162 432 IPR011009 -
Seca12g04780 483 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 88 439 - -
Seca12g04780 483 MobiDBLite consensus disorder prediction 84 104 - -
Seca12g04780 483 FunFam Kinase suppressor of Ras 1 165 259 - -
Seca12g04780 483 FunFam serine/threonine-protein kinase HT1 261 454 - -
Seca12g04780 483 CDD STKc_MAP3K-like 185 432 - -
Seca12g04780 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Seca12g04780 483 PRINTS Tyrosine kinase catalytic domain signature 256 269 IPR001245 GO:0004672|GO:0006468
Seca12g04780 483 PRINTS Tyrosine kinase catalytic domain signature 340 350 IPR001245 GO:0004672|GO:0006468
Seca12g04780 483 PRINTS Tyrosine kinase catalytic domain signature 294 312 IPR001245 GO:0004672|GO:0006468
Seca12g04780 483 PRINTS Tyrosine kinase catalytic domain signature 359 381 IPR001245 GO:0004672|GO:0006468
Seca12g04780 483 PRINTS Tyrosine kinase catalytic domain signature 403 425 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04780 Seca-Chr12 131102990 131107503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04780 1 483 MAP Kinase Kinase Kinase AT5G58950 58.065 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca12g04780 PK_Tyr_Ser-Thr 1.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04780 - - gmx:100784454 850.506