Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04779 ATGAAAACACAGGATACATATTGGGGTTTGAGATTTGTTACTGTTTTCCACCTTGTGATGCAGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTGGAGCCTAATAATGCTGCTAAAGTGATAGGGATGCTTCTGGAAATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCAGAGGCCTTGAAAGCAAAGGTGGCTAAGGCAATGGACGTAATGTTACACAACAGACTAGCAAAACTGAGGAAGGGAGTTGGTTCCACATCAGAAAAGACACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACGGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAGAGGCTTATGTGCAGCAATTAGAATCAAGTAGATTAAAGCTCACTCACCTTGAAAAAGACATTCAAAAAGTGTGTGCTCAGGAACTTTATGGATTGGGAGCTAGAAGGATTGGAGTTATTGGTTTGACACCAATAGGGTGTGTGCCCTCACTGAGAAGAATTGGTGGAGGAATACAGAGAGCATGTCATGATTCTGAAAACCAAGCAGCAATCCTCTTCAACTCAAAACTCTTATCTCAAATGGATGCCCTTAAAGAACCTAACTCGAAGACAAAAGATGTACTCAAAGACAATGCGTTCTATGACAAGTCTAAGGGTTCACGAAGGTCTCCTCCAAAAGAAAATACTAAACCACAAGAATTCAAACTCCACAACCAAGAGAGAGCTTTCAAACGTGCAATCAATCTTCAACTATATGCAGTGACAACAAAGTTTTATATCATGGAGCTGCAAACGAAACAAGAGGAAAAGTTGCAAAAGGTGCAGTATATGGCTCTCTATTCAAATCTTGGAAGCCAATCCAATAGCTAA 876 0.4178 MKTQDTYWGLRFVTVFHLVMQGENLYPLVEQLEPNNAAKVIGMLLEMDQTEVLHLLESPEALKAKVAKAMDVMLHNRLAKLRKGVGSTSEKTLDAKTLRRLAQNGEAARKSRLRKEAYVQQLESSRLKLTHLEKDIQKVCAQELYGLGARRIGVIGLTPIGCVPSLRRIGGGIQRACHDSENQAAILFNSKLLSQMDALKEPNSKTKDVLKDNAFYDKSKGSRRSPPKENTKPQEFKLHNQERAFKRAINLQLYAVTTKFYIMELQTKQEEKLQKVQYMALYSNLGSQSNS. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04779 291 FunFam BZIP family transcription factor 95 144 - -
Seca12g04779 291 SUPERFAMILY Leucine zipper domain 98 137 IPR046347 GO:0003700|GO:0006355
Seca12g04779 291 SUPERFAMILY PABC (PABP) domain 22 73 IPR036053 GO:0003723
Seca12g04779 291 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 78 IPR002004 GO:0003723
Seca12g04779 291 Gene3D - 18 77 - -
Seca12g04779 291 Pfam Poly-adenylate binding protein, unique domain 21 72 IPR002004 GO:0003723
Seca12g04779 291 Coils Coil 115 135 - -
Seca12g04779 291 SMART poly_2 17 76 IPR002004 GO:0003723
Seca12g04779 291 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 99 114 IPR004827 GO:0003700|GO:0006355
Seca12g04779 291 MobiDBLite consensus disorder prediction 214 234 - -
Seca12g04779 291 Gene3D SGNH hydrolase 100 225 IPR036514 -
Seca12g04779 291 Pfam bZIP transcription factor 95 135 IPR004827 GO:0003700|GO:0006355
Seca12g04779 291 PANTHER TRANSCRIPTION FACTOR TGA9 87 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04779 Seca-Chr12 130922013 130926170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04779 19 73 Eukaryotic Initiation Factors Gene Family AT1G49760 85.455 2.96e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca12g04779 PABP 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04779 - - zju:107409892 100.523