Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04769 ATGGACCCAATACCCCCCCGAATATTAACCAATGAAGACATTTTTCGAATTCATCTGTATGATTATTTCAGGAAGAAGGGATTTAACCAAACTGCAGAAGCTTTCCGAAGAGAAGGAGAAGTTACTAGACAACCTTCCGCTGATCATGACGTCCCACAAGGAGTGCTGCGCGACTTTTGGGGTTTATTCCATGACATATATTTCTCCAATCAGTTACCACTACCAGCATCCTCCAATCAGGCCCCAGACCTTATTGGTAGTATTATGAATATCCCTCGAATGGTTCGGGATGGATATTCAATCCATTTTCTTGCAGGTTTTCCAAGCCATGACAGGCTTGCGTCCTGCCATTTTTCATCGGATGGAAGTATTTTGGCAAGTGGTGGCCTTGGAAAAAAGGTTTTCTTTTGCTACACAAACACTTGTGATTCTGTTACTACATTAGAATCACATCTTGATCCCATCTCAGAAGTTTGTTTTCAACAAGGTTCAGCTCTACTTGCAACTGCTTCCTATGATAAGACTGTAAAACTATGGGATGCAACCAAACCTGGCAGATTATTGTATAATCTTATTGGGCATAATGGGTGGGTAAAGTCATTGGACTTCCACCCCATGGAAAGGGAAGTTCTTTGCTCCTCTGATAGCTTTGATGTAATTGAAATGTGGAATGTCAATCAGGGTGTAAGGATAAAAAATGTTATGGCAGGTGGACAAATAATTAGGTTTCAGCCACGATTTGGGAGATTTTTGGCAGTTGCTAATGGAAAGATCATCAACATATTTGATATTCAGATTTGGAGAATTCAAAACCGTCTAGAGGGACATATCAATGATGTTCTTGCCATGTGTTGGGATTCAACTGGACAAATGATTGCTTCTGTCAGTGAAGATTGTGCACGTGTCTGGTCGGTTGTGGTGTGTGGATATTGTATGCATCAATTGCCATCGAATGGGAAGAGGTTTCAGTCAATTGTATTCCATCCTAGATACCCTAATGTCTTAGTTATTGGTGGCTTTCAGTGCATGGAAGTGTGGGTTCCTGAGACCGGGCATACATATAGTATTCATGCCCACAATGGATCAATCAGTGGATTAGCAGCTTCAACGCAAACCGAATGTATTGCCTCAGTTAGCAATGATCAGTGCGTGAAAATTTGGAAATGA 1167 0.413 MDPIPPRILTNEDIFRIHLYDYFRKKGFNQTAEAFRREGEVTRQPSADHDVPQGVLRDFWGLFHDIYFSNQLPLPASSNQAPDLIGSIMNIPRMVRDGYSIHFLAGFPSHDRLASCHFSSDGSILASGGLGKKVFFCYTNTCDSVTTLESHLDPISEVCFQQGSALLATASYDKTVKLWDATKPGRLLYNLIGHNGWVKSLDFHPMEREVLCSSDSFDVIEMWNVNQGVRIKNVMAGGQIIRFQPRFGRFLAVANGKIINIFDIQIWRIQNRLEGHINDVLAMCWDSTGQMIASVSEDCARVWSVVVCGYCMHQLPSNGKRFQSIVFHPRYPNVLVIGGFQCMEVWVPETGHTYSIHAHNGSISGLAASTQTECIASVSNDQCVKIWK. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04769 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 180 IPR001680 GO:0005515
Seca12g04769 388 ProSiteProfiles LIS1 homology (LisH) motif profile. 20 43 IPR006594 GO:0005515
Seca12g04769 388 Pfam LisH 20 39 IPR006594 GO:0005515
Seca12g04769 388 Gene3D - 241 388 IPR015943 GO:0005515
Seca12g04769 388 SUPERFAMILY WD40 repeat-like 111 388 IPR036322 GO:0005515
Seca12g04769 388 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Seca12g04769 388 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 13 72 IPR044716 GO:0003714
Seca12g04769 388 Gene3D - 95 240 IPR015943 GO:0005515
Seca12g04769 388 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Seca12g04769 388 CDD WD40 107 388 - -
Seca12g04769 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Seca12g04769 388 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Seca12g04769 388 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Seca12g04769 388 Pfam WD domain, G-beta repeat 270 303 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 266 304 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 141 180 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 100 138 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 308 347 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 184 224 IPR001680 GO:0005515
Seca12g04769 388 SMART WD40_4 349 388 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04769 Seca-Chr12 130307137 130309650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04769 80 305 U-box Gene Family AT2G33340 23.013 5.28e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04769 - - psat:127101304 427.943