Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04768 ATGGCTGCACCTTCATCTTCCGCAGCTCTCAATTCCCTCTCCTCTCTCTCCCTTCGCACCTCTTCCCCCTTCTCTCTCCTCCCCACAACCAACAAACTCACCTTCCCTCTCTTCACCAGAACAACCCAACAACAGTCCCTCTTATCCACAACCAACAACAATGTCACCCTTCTCTCCTTCCCCAAATCCAAATCCTCCGACGAAATCGACACTTCCTTCTTCGAAACCGCCAACCCCGAAGAAGACCTTCCCTTCAACCCCCCTGAAGTCCCTGAAGGCTTCGTTCCCCCTCCCTCCATCGATGAGGGACCCCTCGAAAACGAGGACGAAATCGCTGCGGCGTACGAGGAGCTCTATGGTCCTGCATACAGCGGAGTGACTGTTCTGGGCAATGACATATCCGTGATGGACTCGAAGGTGAAGAAGGACACAGGGTTCGGTTCGGGAGTGAAGAAGGAGAAGATTAGGGATGGGTTCGAAGAGAGGGTGGTGCAGGTGAGGAGGGTGACCAAGGTGGTGAAAGGAGGGAAGCAATTGAGGTTCAGGGCTATTGTGGTGGTGGGTGACAAGAAAGGACAAGTAGGTGTTGGAGTTGGTAAGGCCAAGGAAGTTATAGCTGCAGTTCAGAAATCTGCTGTTAATGCAAGGAGGAACATCATCAATGTACCTATGACTAAGTACTTGACTTTTCCACATAGATCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAACTAGGAAGTAATAATGCACTCAACAATGCCAGAGCAACTATTGTTGCTGTGCAGAAGATGAGGCAGTTCCGTGAGGTTGCTGAGGAGCGTGGAATCCCAATGGAAGAGTTATGGAAGTAA 948 0.5032 MAAPSSSAALNSLSSLSLRTSSPFSLLPTTNKLTFPLFTRTTQQQSLLSTTNNNVTLLSFPKSKSSDEIDTSFFETANPEEDLPFNPPEVPEGFVPPPSIDEGPLENEDEIAAAYEELYGPAYSGVTVLGNDISVMDSKVKKDTGFGSGVKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAIVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIINVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATIVAVQKMRQFREVAEERGIPMEELWK. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04768 315 NCBIfam 30S ribosomal protein S5 158 312 IPR005712 GO:0003735|GO:0006412|GO:0015935
Seca12g04768 315 Pfam Ribosomal protein S5, C-terminal domain 236 306 IPR005324 GO:0003735|GO:0005840|GO:0006412
Seca12g04768 315 SUPERFAMILY Ribosomal protein S5 domain 2-like 229 307 IPR020568 -
Seca12g04768 315 FunFam 30S ribosomal protein S5 148 220 - -
Seca12g04768 315 ProSitePatterns Ribosomal protein S5 signature. 176 208 IPR018192 -
Seca12g04768 315 ProSiteProfiles S5 double stranded RNA-binding domain profile. 159 222 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca12g04768 315 Gene3D - 146 220 - -
Seca12g04768 315 Hamap 30S ribosomal protein S5 [rpsE]. 136 312 IPR005712 GO:0003735|GO:0006412|GO:0015935
Seca12g04768 315 FunFam 30S ribosomal protein S5 224 315 - -
Seca12g04768 315 Pfam Ribosomal protein S5, N-terminal domain 159 223 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca12g04768 315 SUPERFAMILY dsRNA-binding domain-like 155 224 - -
Seca12g04768 315 PANTHER RIBOSOMAL S SUBUNIT 152 314 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca12g04768 315 Gene3D - 226 314 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04768 Seca-Chr12 130237312 130240788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04768 159 299 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 2.32e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04768 K02988 - gmx:100787105 402.134