Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04759 ATGTTGGGTAATAACTGTGAGAAAACGGTTCTCATCTCTCCAACGTATAACAAATGGACACAGATAGATGATCAAAACGTCTCAATGGCTTCTTCCTCTGTTAAGGTAATGGAAAAACCAAATCAAGAGCTTCTTCAGCAGCAACAACAAGCACTTAGGTGCCCTCGTTGTGACTCATCAAATACCAAATTCTGCTACTACAACAACTACAGCTTGTCACAACCAAGGCACTTTTGCAAAGCTTGTAAGAGATATTGGACAAGAGGTGGAACTTTGAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAGCGTGTTAAGAGACCAATAACAACCTCTTCTTCTTCAACCATTGATCTTGTTTCTTCTGTTTCAACTACTACTAATGTTTCTCCTTCTTCTTCTTCCACTCCTAGTACCAATTCTCAACCCTCTTCCACTACCTCAAATCAAATCAACCCTTTGTTTTATGGGTTACCAGGTTCTGGTGGTAATTCCTCTGATGTGATGAATCTTCAGTTTCCAAGGTTCAATTCTAGGGTCTATGATCTTCAACCTCATATGAATGCCCTTGGATTGGGATTTTCTTCAGGGGTTTTGTCAAGTGAAGTGAGTGATAATATTGGTTATAGAAATGGTGGGTTTAGTAGTTCAAATTCAAATAACAACAACACTAGTTTTGTTTCTAGCTATAATTCCATCTTTGGTGCTTCTTCAACTTCCATGCCTTCAAATCCTGTTATGGCTTCCCTTCTAAGCTCTACTTTACTTCAACAAAAATTTCTCAATAAAGGTGATCCAGGTAGCAATGCTTTTCATCAGGGGATATTGATGGAAGAGGTGAATCATGGCAGTGAAAGAGAGATGGTGGCTTTAAAAGATGTGAAAGTTGAAGGACAAAACAGGCTGGAGTGGAATAATAATAATGGTGGTGCTTGTCAAAACCAGATCGAGCATATGGGGTTGTTGTCTGATCCTTCACTTTATTGGAATAACACAGCAGCAACAACAGGTTTGGGTGGTGCTTGGAGTGATCAACCTAATAATATTGGTCCTTCTTCAGTCACACCTCTGATCTAG 1083 0.3961 MLGNNCEKTVLISPTYNKWTQIDDQNVSMASSSVKVMEKPNQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITTSSSSTIDLVSSVSTTTNVSPSSSSTPSTNSQPSSTTSNQINPLFYGLPGSGGNSSDVMNLQFPRFNSRVYDLQPHMNALGLGFSSGVLSSEVSDNIGYRNGGFSSSNSNNNNTSFVSSYNSIFGASSTSMPSNPVMASLLSSTLLQQKFLNKGDPGSNAFHQGILMEEVNHGSEREMVALKDVKVEGQNRLEWNNNNGGACQNQIEHMGLLSDPSLYWNNTAATTGLGGAWSDQPNNIGPSSVTPLI. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04759 360 MobiDBLite consensus disorder prediction 110 155 - -
Seca12g04759 360 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Seca12g04759 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 230 IPR045174 GO:0003700|GO:0006355
Seca12g04759 360 MobiDBLite consensus disorder prediction 98 155 - -
Seca12g04759 360 Pfam Dof domain, zinc finger 50 106 IPR003851 GO:0003677|GO:0006355
Seca12g04759 360 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04759 Seca-Chr12 130085411 130086969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04759 1 160 C2C2-Dof Transcription Factor Family AT1G28310 52.761 2.23e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g04759 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04759 - - gmx:778098 331.257