Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04758 ATGGAAACCAACACAACAACAACACCCTATGTGGCCCTCACTCATTACTCTCATCCTATTTACCCCATCTATTTATTTTCCCCCCTATTTATACCAAGTTTTCTTGGTCTTGTTCTCCTAACTTCTCTGAGTTTTCTCCATATTCTGGATCTCTCTTGCTTCTTTTTCCCTATGGACACAAGCAGGTCAGAGGGAAAGAGGACCTTGAGGTACAAAGAGGAGGTGGATGATGAAGAAGAAGAGGAAGAGGAAGAGGTGAGTGACATGGGATTTGGAGAAGATGGTAGAAGGAAAAGAGTAATGACAGATCTCTATAGCAAAAGAGGGTCCAAAGGTGGAGGTTCTGCAGTGCCACCTGCTTGTCAAGTGGATAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACCGAAGACATAAGGTCTGTGAGTACCATGCCAAAGCTCCTGCCGTACACATTGCAGGGCTTCAGCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGATCTATCCGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGATTGGCTGGGCATAATGAGAGGCGTCGCAAAAGTGCTATTGATTATCATGGAGAATGA 609 0.4401 METNTTTTPYVALTHYSHPIYPIYLFSPLFIPSFLGLVLLTSLSFLHILDLSCFFFPMDTSRSEGKRTLRYKEEVDDEEEEEEEEVSDMGFGEDGRRKRVMTDLYSKRGSKGGGSAVPPACQVDNCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGLQQRFCQQCSRFHDLSEFDDSKRSCRRRLAGHNERRRKSAIDYHGE. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04758 202 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Seca12g04758 202 MobiDBLite consensus disorder prediction 73 93 - -
Seca12g04758 202 Pfam SBP domain 121 194 IPR004333 GO:0003677
Seca12g04758 202 MobiDBLite consensus disorder prediction 75 89 - -
Seca12g04758 202 Gene3D - 112 182 IPR036893 GO:0003677|GO:0005634
Seca12g04758 202 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Seca12g04758 202 FunFam Squamosa promoter-binding-like protein 14 113 182 - -
Seca12g04758 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 195 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04758 Seca-Chr12 129921853 129923645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04758 111 198 SBP-box Gene Family AT2G33810 71.591 4.78e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g04758 SBP 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04758 - - gmx:100527199 227.639