Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04757 ATGGCCGAGGTTTCCACTTCAGCGTACAAGGAATATGTCGCAGGCTTGCTCGCTGGCGTTGCTGCTGTAGCCACTGGCCACCCCTTTGACACAGTAAAGGTGAAGCTGCAAAAGCACAACACAGAAGGACATATAATTCAGTACCGGAATGGATTGCATTGCACAGCAAGGATATTGCAAACTGAAGGGATTAAAGGACTTTATAGAGGAGCAACATCATCTTTCGCTGGGATGGCTTTGGAAGGGTCCCTTTTTTTCGGCATTTATTCCCAGACAAAAATGTATCTTCAGGGGGGTGTGCAAAGTGGCGAACCACGGCCTCAAGTGATAATACCATCTGCAGCTTTTAGTGGTGCCATCAACAGTTTTGTTTTAGGTCCAACAGAGCTGATAAAGTGTAGGATGCAGATCCAAGGCGCTGACTCTTTGGTTCCTATGTCCAATAGATACAGTAGTCCCCTTGATTGTGCCCTTAAAACTTTAAAAAGTGAAGGGGTGAAAGGAATTTTTCGTGGAGGTTGTACAACATTGCTTAGAGAATCTATAGGGAACGCTACCTTTTTCAGCGTATACGAAAATATGCGTTATCACATGCATTCACATATCAAACCTGCTTCATCCAATCACAGCAACCTGATAGATATTGGAATTGGGATTGTTACTGGTGGCATTAGTGGTGTGGCTGTAAACATCTTGAGAACTAAGCATTTTTGGTTGGTAGTTTTGCCCCTTGACGTGGCGAAGACTCTAATTCAGACAAACCCTGATAAGAACTGCTCAAGAAATCCTTTTCAGATCTTGAGTTCAATCTACAGGAGGGCTGGATTGAAGGGGTGCTATACAGGTCTAGGTCCTACAGTAAGTCGAGCATTTCCTGCTAATGCAGCAACAATTGTCACATGGGAGTTAGCATTGAAATTGTTAGGCATTAAGCATGACTGA 942 0.4384 MAEVSTSAYKEYVAGLLAGVAAVATGHPFDTVKVKLQKHNTEGHIIQYRNGLHCTARILQTEGIKGLYRGATSSFAGMALEGSLFFGIYSQTKMYLQGGVQSGEPRPQVIIPSAAFSGAINSFVLGPTELIKCRMQIQGADSLVPMSNRYSSPLDCALKTLKSEGVKGIFRGGCTTLLRESIGNATFFSVYENMRYHMHSHIKPASSNHSNLIDIGIGIVTGGISGVAVNILRTKHFWLVVLPLDVAKTLIQTNPDKNCSRNPFQILSSIYRRAGLKGCYTGLGPTVSRAFPANAATIVTWELALKLLGIKHD. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04757 313 Gene3D Mitochondrial carrier domain 113 312 IPR023395 -
Seca12g04757 313 FunFam Mitochondrial carrier protein 2 109 - -
Seca12g04757 313 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 308 - -
Seca12g04757 313 FunFam Mitochondrial amino acid carrier 180 312 - -
Seca12g04757 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 307 IPR018108 -
Seca12g04757 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 95 IPR018108 -
Seca12g04757 313 Gene3D Mitochondrial carrier domain 2 112 IPR023395 -
Seca12g04757 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 197 IPR018108 -
Seca12g04757 313 Pfam Mitochondrial carrier protein 113 198 IPR018108 -
Seca12g04757 313 Pfam Mitochondrial carrier protein 238 308 IPR018108 -
Seca12g04757 313 Pfam Mitochondrial carrier protein 6 97 IPR018108 -
Seca12g04757 313 SUPERFAMILY Mitochondrial carrier 7 302 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04757 Seca-Chr12 129905101 129912322 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04757 4 308 Antiporters AT1G79900 29.032 6.07e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04757 K15109 - gmx:100815087 503.056