Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04752 ATGCTAGTACAGAAGCGTTCTCATGAGGCTCTTGAAGAGGAGGATGCTGGGATGATCAACCTTGAGAAACCAGAAGATGAAGTCGCATCCGATCGAAGCCATTCATCGAGCAACGGGGACAAGGAACGATATGTGCTTATAAAATTGTCAGATGTACGCAACGAAGTTCAGTGTCCTATCTGCCTAGGCGTCATTCGAAAAACAAGAACTATAATGGAATGCCTGCATCGCTTTTGCAAAGAGTGCATAGAAAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCAATGCTCACTGAGAGATGACCCAAACTATGATGCCTTGATTGCTTCTATCTATCCAAATATTGACAAGTATGAAGAGGAGATCCAAGCTTCCATTGCCCATACTCTACACCGACAAACAGAAGCATTGAGTAGGAAACAGAATGCCAAAGCAACAACAATAGCTTTTATGAGGAGGTCACAAGGCAGCTATCAAACTTCACTTCTGAGGAGACGTAGAAACTTTAGAAATGCTGGTGACCTTCAAGTGTCCAATGACAATGAGAATATGAATGATAAAGATGAGGGAAAGGACTCATCTTCTGGTGATGAACAAACAGAAACCAAGACAAGAAGATGCAATAGAGGTGGAGAACGAGGAAATGCTACCACTGATGCAGATGGAACTGGTGATGAAAATATTCCAGAAATGATGAGAGAAATCATGAGTGCATCTGGTATACTTGCTTGGGGAAAAAAAGGTCACCGGAGTCACAACCGAGTCAAGGGTAAGAATTCCAAAAACAGTCGCATCTCCAGATTGGTTGATCACCTTGGTAGCTCGGGGATCGATGATGATGAGATGTCTGCCTTTATATTTCTTGTCTCTTTGGATGAGCAAAGAATACCAAGGTTGCTACAACCATACCTTAGCTGCAAGCCTACTTTGATGTATGTTTCACTTAAAGCTAGGCTACAAGCGGATGAAGTTGAATTATGCTTGGTAATAAAGCCGCAAGCCAGTCTTGTAAGTGGTGAAAGTACTGTTGATCCAAACAAAGATCATTTACATGTTGTAGGAGACCAAGAAACTTTGGCTGAACTGAGAACTTATGATAATACCACCCATGGCTATCTGGTCATGGCTTACAAGAGGAAGTTGCTAAACTCGGACATAGTTGGGTTGAGCTGA 1200 0.4267 MLVQKRSHEALEEEDAGMINLEKPEDEVASDRSHSSSNGDKERYVLIKLSDVRNEVQCPICLGVIRKTRTIMECLHRFCKECIEKSMRLGNNECPACRTHCASQCSLRDDPNYDALIASIYPNIDKYEEEIQASIAHTLHRQTEALSRKQNAKATTIAFMRRSQGSYQTSLLRRRRNFRNAGDLQVSNDNENMNDKDEGKDSSSGDEQTETKTRRCNRGGERGNATTDADGTGDENIPEMMREIMSASGILAWGKKGHRSHNRVKGKNSKNSRISRLVDHLGSSGIDDDEMSAFIFLVSLDEQRIPRLLQPYLSCKPTLMYVSLKARLQADEVELCLVIKPQASLVSGESTVDPNKDHLHVVGDQETLAELRTYDNTTHGYLVMAYKRKLLNSDIVGLS. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04752 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 128 IPR013083 -
Seca12g04752 399 SMART ring_2 58 97 IPR001841 -
Seca12g04752 399 Pfam Zinc finger, C3HC4 type (RING finger) 57 97 - -
Seca12g04752 399 CDD RING-HC_RING1-like 55 120 - -
Seca12g04752 399 MobiDBLite consensus disorder prediction 178 236 - -
Seca12g04752 399 MobiDBLite consensus disorder prediction 190 221 - -
Seca12g04752 399 SUPERFAMILY RING/U-box 46 113 - -
Seca12g04752 399 PANTHER OS11G0578200 PROTEIN 14 389 IPR044592 -
Seca12g04752 399 MobiDBLite consensus disorder prediction 1 39 - -
Seca12g04752 399 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Seca12g04752 399 ProSiteProfiles Zinc finger RING-type profile. 58 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04752 Seca-Chr12 129781772 129786856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04752 56 147 C3H Transcription Factor Family AT2G30580 32.990 2.13e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04752 K10695 - zju:107425269 413.69