Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04716 ATGGAGAGCGAGGCCGGTTCGGAGGGAGACAGTCATCGGAAAAGTGGTGGTGCAGATGATGACAGCAATGAGAACAATCAGAACCACAACCACAACAACGATGGAAGCAATAGTAAGATTTCGAATTCCAATGAGGGGCATAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCCTTGGATAATTACCCTTCAGAGGCGATGAGGGCCGACCTGTCGCAGAAGTTGGGCTTGTCAGATCGGCAGCTGCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGCCGTCCAAGAAGCCGCTGCCGCCGCGGAAGGTGGTGGCGGAACCATTGCCGGATTCCCCCACGGATGACCTCAGGTTGGGACCTGAACTTGGTAATGAGTACGGGTCGGGTTCAAGTCCGTTTACCCGTCTGGAGCACCGGAATGCGGTGCCGCGGGGTGTGCCTGCTTATTATGAGTCCCCGCAGGCTGTAATGGAGCTTAGAGCAATTGCTTGTGTGGAGTTACAGTTGGGGGAGCCATTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGATCCATTGCCACCTGATGCATTTGGGGCACCTATAGCGGTTACAGAACACCAGAAGCGACCTAGTCTTGCCTATGACAGTAAGATATATGAAAGACATGATGTTAAAACAAATAAGGCTATGGCAAGGACATTCCATGAATATCAATTTCTACCGAATCAGTCTGGTGTTAGGTCTGATGCATTTGGACAGTTCAGCCAATCTCATTTACATGATCCAATGGAGAGTCCTGCCAGAAATCCCCCTTTTGCGCTTGGACATGAACAACTGCCCAGAATTCATGCCACCCAAGGTCACTCTTCTCGTGTTCGATTGTCTGAGCAAGACAAGCATGGAAATTCCTATCAATCTCCTCCTCATGATGATGATGTCGTCCCCCAAAGGGAACTGTGCCCAAAAGTTGAAATGAACTCTCACTTAACTGATCGTGAAATTGTTGGGCCAGAAAATTCTTATGCTTTACCTAGTGGACAAGTTTTACATAACAATGCAATGCGAATCGAGAGGAAACGAAAGAGTGATGATGCCAGAATTGCAAAGGAAGTTGAAGCCCATGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGACAACCTTAGACGAAAGAATGAGGAACGAATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAAGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAGACGAGAGCAAAAACGTGAAATCGAACGTAGGGAAAGGTTTTTGCTGAAAGAAAATTTAAAAGCTGAGAAAATGCGGCGAAAAGAAGAGCTTCGCAAAGAGAAAGAGGAAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTTTGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTAATTTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTGAGAGTGTAAAGCTAAGAAAACCATTTGCTATTGAACCCTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGAGTTCCGTGCATGTACTGATTTCCTTTCTACATATTGCATTAACAGTTTACTCTCAATTTGGCTAATTGCTTGGTTGAGGCTTCTGAATTTAAGGTTTGAAAACTGTGGTGGTCTATTTCAGGTTTGGAGATTTTTAATTACCTTTGCTGATATTCTGGAACTATGGCCTTTTACTCTTGATGAGTTTGTGCAAGCATTTCACGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTAATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTAGTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCCGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAGTTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTAAAGAAAAGAAGTATTACAATCTCATATGCAAATGATAAAGATGAGGGAAGAAATTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAAGGCAGTGGCAAAAATGCAGGAGAGAGGTCTATTAGCACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCACTTGAGGGTAGCGAGGGATTGACTGTGCTAGAGCTTGCAGAAAAAATCCAGAAATCTGGTCTTCGGGACTTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATACCAAACTTTTTGAAAGAATAGCTCCATCAACTTATCGTGTGCGTGCAGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAAATATTTGAAAATGGATTTCTAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCTTCAAGTGCTAACAAAACATCTGATCAGTGTGATGATTCCTCATTAAATGGAAAAGAAAATTTGGGCCATGATGTAGAACTTAAAGATAAGTTTGATAAGGATTTGCCTTGTTTTCCTGAGGATGGGTCCAAGAATGCTGATTGTCTGAGTGCTGTCACTGGACAACCTGTTGCTTGTGGAGATCTGAATGCAGAAAATCTTGGTGAAGATATGGAAATTGATGAAAGCAAATCTGGAGAGTCATGGGTTCAAGGGCTTACAGAAGGAGAATATTCCGATCTCAGTGTGGAGGAGCGTTTAAATGCTCTTGTTATATTGGTTGGTGTGGCAAATGAAGGAAATTCAGTTCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTTCAAAAGATGATAATTTTAATAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAAACACAAAACACATGTGCTGGTGTGGAGGGTAACCAAAGGCCATTGCTTGACATTAATATTTGCAATAATAATGAGGCATCTCCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAAAGCCTGCCTATTGAAAAGCCATCATCGGTTCAAGATCTCTGCATAGGTCTAGATAACCCCCAGGCTTTGCAATGCGCACAATATTCAAAAAGGTCACGATCTCAATTGAAATCGTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCATTACCCCTTGGGCAAGACCGCAGACATAATAGATACTGGCAATTTGTTGCATCAGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGCAAGTGGAGGCTTATTGATTCTGTGGAGGCCTTTGATGCACTAATGAATTCACTGGATTCACGTGGGGTCAGGGAATCTCATTTGCGCTTAATGTTGCTAAAGATTGAGAACTCCTTTAAGGAAAATGTTCGAAAGAATACACGATGTGCCAAAGTTGGAAACAGAGGTGAAACTTGCATTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCACCATACTGGATCTAATAGTACTAGCAGTACTCTGTGTGGTTTGAACTCTGATACTTCAGAAACTTCAACATCCTTCAGAATTGAGCTTGGAAAAAGTGAGAGTGACAAGAAAGCTGCCTTGAGAATGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACTCATCAATATTATGTGCAATGAAATATGGGAAGAAGAGATGCAAACCACTGGTTGAGATCTGTGATATCTGTCACAACCCCTATTTCTTTGAAGACTCTCATTGCAGTTTTTGCCACCGTACTTTCCCCTCAAGTGATGGATTTAATTTTTCTAAACATGCATTCCAATGTGGAGACAAGTTACCCAAAGATGTTTGTATTTTGGATTCTTCTCTTCCCTTGAGGACAAGATTGCTTAAGGCCCTTCTGGCTTTTATTGAGGCATCTGTTCCACCTGAAGCATTTCAATCACTATGGACAAAAGATATTAGGAGACACTGGGGTGTAAAGATGAGCAAATCATCTTCCGTTGAGGATCTTCTACAGATATTGACCCTATTTGAGAGAGCATTAAAGCGAGAATTTTTATCATCAACATTCGCCACAACAGGGGAGTTGTTGGGATTGAGCACTATGTCAGAGAGTGCTGCTCGTGCTTCTATTGCTTCTGAACCAGTTGCTGTACTTCCATGGGTTCCACGGACCACTCCAGCTGTGTCTCTCAGACTTTTTGAGTTTGATGCATCCATTATGTATGAAGAGAAACCTGAGCCTCGTGAGGAGAAAGAAGCTAGAGCATTCGTAAAGCTTCCTTCAAGATATAGTCCCCTCAAACCGAGTAAGGTGGTTGAACCAGCAAACTTGGACCATGGTGAATTCTTGAAAGTTAAATCTGCTCCTATGAAAATTGTGCGAAGCAGCAATAAACGGGGACTAGTGAGTCATGATAAAGCACGGGGTAAAAAGCTAACTAAAAGAGTGCATGATTCCAAACGAGATACAAGCCGCCGCAATGTTAAGGTCACTGGGAATCCAAGTCAAAGAATAAAACAGCAGCAAGGGCGAAGATCACAAGGACAAGCCGGTGGACGTGGTCGCCGAACAGTCAGGAAAAGAAGAGTGGAGAAGAGGGCTGTTGAAGATTTGTTGCTTGGCCATAGGGCTCCCACTCATAACTCCAATATTGGTAGAGAATCATTGAGAATATTGGATGAGGACTCGGATGATGAAAAGGCTAGTCCCATGACTCCCGTCCACAGGGGGGCTGCTGCTGACATTAGTAACAGTGCTGAAGAGGCTGAATCTGATGACAATGCTCAAGCAATGGAATCTGATGACAATGTCCAAGCAGTGGAATCTGACGACAATGACCAAGTAGTGGAATCTGATGACAATGTTCCAGCAGTGGAATCTGATGACGATGACCAAGCAGTGGAATCTGATGACAATGTCCCAGCAGTAGAGTATGATCAAGGAAACTGGGAGATAGGTTATAATGGTGTCCCAAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAAAATGAAGAGGAAGATTCAGAGGCAGATCTTATGAGCGAGGGTTCAGATGGTATGGCAAATAAAGTTGAAAATGAAGAAAGCTCAGACTCGGATGGCTCTGAAGACTCTTCTGTTTAG 5508 0.4297 MESEAGSEGDSHRKSGGADDDSNENNQNHNHNNDGSNSKISNSNEGHSKPKRQMKTPFQLETLEKAYALDNYPSEAMRADLSQKLGLSDRQLQMWFCHRRLKDKKDLPSKKPLPPRKVVAEPLPDSPTDDLRLGPELGNEYGSGSSPFTRLEHRNAVPRGVPAYYESPQAVMELRAIACVELQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEHQKRPSLAYDSKIYERHDVKTNKAMARTFHEYQFLPNQSGVRSDAFGQFSQSHLHDPMESPARNPPFALGHEQLPRIHATQGHSSRVRLSEQDKHGNSYQSPPHDDDVVPQRELCPKVEMNSHLTDREIVGPENSYALPSGQVLHNNAMRIERKRKSDDARIAKEVEAHEMKIRKELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTRREQKREIERRERFLLKENLKAEKMRRKEELRKEKEEERRKAALEKATARRIAKESLELIEDEQLEMMELAASSKGFSSIIHLNFDTLQNLESFRDSLCVFPPESVKLRKPFAIEPWINSEENVGNLLMEFRACTDFLSTYCINSLLSIWLIAWLRLLNLRFENCGGLFQVWRFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEVFRQLALSAGYGPQLKKRSITISYANDKDEGRNCEDIISTLRNGSAAEKAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREESESDEVDEDPEVDDLVNPSSANKTSDQCDDSSLNGKENLGHDVELKDKFDKDLPCFPEDGSKNADCLSAVTGQPVACGDLNAENLGEDMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVILVGVANEGNSVRVVLEDRLEAANALKKQMWAEAQIDKVRSKDDNFNKSDFPSINGNKVETQNTCAGVEGNQRPLLDINICNNNEASPSTAENQKAAPVAQSLPIEKPSSVQDLCIGLDNPQALQCAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSVEAFDALMNSLDSRGVRESHLRLMLLKIENSFKENVRKNTRCAKVGNRGETCIKNEADETDSSPDHHTGSNSTSSTLCGLNSDTSETSTSFRIELGKSESDKKAALRMYQDFQKWMWKECYNSSILCAMKYGKKRCKPLVEICDICHNPYFFEDSHCSFCHRTFPSSDGFNFSKHAFQCGDKLPKDVCILDSSLPLRTRLLKALLAFIEASVPPEAFQSLWTKDIRRHWGVKMSKSSSVEDLLQILTLFERALKREFLSSTFATTGELLGLSTMSESAARASIASEPVAVLPWVPRTTPAVSLRLFEFDASIMYEEKPEPREEKEARAFVKLPSRYSPLKPSKVVEPANLDHGEFLKVKSAPMKIVRSSNKRGLVSHDKARGKKLTKRVHDSKRDTSRRNVKVTGNPSQRIKQQQGRRSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHRAPTHNSNIGRESLRILDEDSDDEKASPMTPVHRGAAADISNSAEEAESDDNAQAMESDDNVQAVESDDNDQVVESDDNVPAVESDDDDQAVESDDNVPAVEYDQGNWEIGYNGVPNRWSRDLVGMSDEDVEASEDDNDNGIEENEEEDSEADLMSEGSDGMANKVENEESSDSDGSEDSSV. 1836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04716 1835 MobiDBLite consensus disorder prediction 878 924 - -
Seca12g04716 1835 Pfam HB1, ASXL, restriction endonuclease HTH domain 779 847 IPR007759 GO:0006355
Seca12g04716 1835 MobiDBLite consensus disorder prediction 302 325 - -
Seca12g04716 1835 SUPERFAMILY Homeodomain-like 34 105 IPR009057 -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1271 1290 - -
Seca12g04716 1835 Coils Coil 403 446 - -
Seca12g04716 1835 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Seca12g04716 1835 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 983 1026 IPR028942 -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1259 1290 - -
Seca12g04716 1835 SMART testlast3 597 656 IPR018501 -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1573 1835 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1665 1682 - -
Seca12g04716 1835 CDD homeodomain 51 105 IPR001356 GO:0003677
Seca12g04716 1835 Coils Coil 381 401 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1715 1748 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 880 901 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 904 921 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 28 44 - -
Seca12g04716 1835 ProSiteProfiles HARE-type HTH domain profile. 779 848 IPR007759 GO:0006355
Seca12g04716 1835 Pfam Homeodomain 49 105 IPR001356 GO:0003677
Seca12g04716 1835 ProSiteProfiles DDT domain profile. 597 656 IPR018501 -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 105 131 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 409 439 - -
Seca12g04716 1835 SMART HOX_1 48 110 IPR001356 GO:0003677
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 295 325 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1606 1626 - -
Seca12g04716 1835 Gene3D - 33 107 - -
Seca12g04716 1835 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1161 1233 IPR028941 -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1 60 - -
Seca12g04716 1835 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 34 572 IPR044977 GO:0006357
Seca12g04716 1835 Coils Coil 452 487 - -
Seca12g04716 1835 MobiDBLite consensus disorder prediction 1782 1808 - -
Seca12g04716 1835 Pfam DDT domain 601 653 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04716 Seca-Chr12 128372255 128383524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04716 41 1833 Homeobox Transcription Factor Family AT1G28420 46.396 0.0 1292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca12g04716 WSD 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04716 - - gmx:100784945 2504.94