Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g04712 | ATGGCTTCCACTAAGAATAGCTACAAAGCAAGTGAGTTATTTGAAGCTCAAGCTCACTTGTACAAGCACATGTATAGCTTCCTCAATCCCATGTCCATCAAGTGGGCCGTTGACCTTGGCATTCCTGATATAATCCACAATCATGGCCAGCCCATTACTCTGCCACACCTTGTCTCTGCTCTTCACATTCCACAATCTAAAGCTACTTGTGTCCAACGCCTCATGCGTTTATTAGCACACATTGACTTCTTTGCAATTCTCAAAATGGATGATGGCAAAGAGGCTTATGCTCTTACCCCACCATCACAACTTCTTGTCAATGGCACTGATCACTGCCTATCTTCAATGGTTCATTTGTTAAACAGCCCAATTCTTGTTGGTTCATACCATCAATTGGGGAAATGGACTTCTGGGGAGGACCTCACAATTGTTGAGACCGCATTAGGCCCTGGAGGCTATTGGGACTTTGTTCATCAAAATCCCACTCATTTGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGAAGGGCTCAGTTCCTTAGTTGATGTTGGTGGTGGGACTGGAAACACAGCTAAGATTATCTGTGAGGCATTTCCACAGTTAAAATACATTGTGTTGGACCTTCCACAGGTTGTCACAGGCTTAACAGGAAACAACAACTTGAGTTTTGTTGGAGGTGACATGTTTAAATTTATCCCTCAAGCTGATGCTGTTTTACTCAAGTGGGTGTTACACAATTGGAGTGATGATGATTGCATAAAGATACTAAAAAATTGTAAAGATGCTATTTCAGGCAATTGTAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAAAACGAGATGAGCAAGAAATGACAGAAGTAAAACTTTTACTGGATGTAGTCATGATGACTAGTCTCAATGGAAGAGAGAGGGATGAAAAAGATTGGAAGCAACTTTTTGTGAAAGCAGGATTCAAACATTACAAGATATTTCCCACATTTGGCTTTAGGTCTCTTATTGAGCTTTACCCTTAA | 1071 | 0.4034 | MASTKNSYKASELFEAQAHLYKHMYSFLNPMSIKWAVDLGIPDIIHNHGQPITLPHLVSALHIPQSKATCVQRLMRLLAHIDFFAILKMDDGKEAYALTPPSQLLVNGTDHCLSSMVHLLNSPILVGSYHQLGKWTSGEDLTIVETALGPGGYWDFVHQNPTHLKTFNEAMESDSHVVRLALRDCKSVFEGLSSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVTGLTGNNNLSFVGGDMFKFIPQADAVLLKWVLHNWSDDDCIKILKNCKDAISGNCKGGKVIIIDIVINEKRDEQEMTEVKLLLDVVMMTSLNGRERDEKDWKQLFVKAGFKHYKIFPTFGFRSLIELYP. | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g04712 | 356 | Pfam | O-methyltransferase domain | 142 | 338 | IPR001077 | GO:0008171 | |
| Seca12g04712 | 356 | FunFam | O-methyltransferase ZRP4 | 107 | 356 | - | - | |
| Seca12g04712 | 356 | Gene3D | Vaccinia Virus protein VP39 | 107 | 356 | IPR029063 | - | |
| Seca12g04712 | 356 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 21 | 356 | IPR016461 | GO:0008168 | |
| Seca12g04712 | 356 | FunFam | Coniferyl alcohol 9-O-methyltransferase | 3 | 105 | - | - | |
| Seca12g04712 | 356 | Gene3D | - | 1 | 105 | IPR036388 | - | |
| Seca12g04712 | 356 | Pfam | Dimerisation domain | 31 | 79 | IPR012967 | GO:0046983 | |
| Seca12g04712 | 356 | CDD | AdoMet_MTases | 195 | 294 | - | - | |
| Seca12g04712 | 356 | SUPERFAMILY | "Winged helix" DNA-binding domain | 11 | 108 | IPR036390 | - | |
| Seca12g04712 | 356 | PIRSF | O-mtase | 1 | 356 | IPR016461 | GO:0008168 | |
| Seca12g04712 | 356 | PANTHER | O-METHYLTRANSFERASE | 12 | 341 | IPR016461 | GO:0008168 | |
| Seca12g04712 | 356 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 112 | 354 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g04712 | Seca-Chr12 | 128262439 | 128263800 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g04712 | 30 | 354 | Monolignol Biosynthesis Gene Families | AT5G54160 | 31.532 | 1.21e-45 | 158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g04712 | K22588 | K13262 | gmx:100818947 | 441.425 |