Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04711 ATGTATAGCTTCCTCAATCCCATGTCCATCAAGTGGGCTGTTGACCTTGGAATTCCTGATATAATCCACAATCATGGCAAGCCCATTACTCTGCCACAGCTAGTTTATGCTCTTCACATTCCACAATCTAAAGCTACTTGTGTCCAACGCCTCATGCGCTTATTGGCACACATTGACTTCTTTTTAATTGTCAAAATGGATGATGGCAAAGAGGCTTATGCTCTTACTCCTCCATCACAACTCCTTGTCAACGGCACTGATCACTGCCTATCTTCAATGGTTCATTTGTTAAACAGCCCAATTCTTGTTGGTTCATACCATCAATTGGGGAAATGGACTTCTGGGGAGGACCTCACAATTGTTGAGACCGCATTAGGCCCTGGAGGCTATTGGGACTTTGTTCATCAAAATCCCACTCATTTGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGAAGGCCTCAGTTCCTTAGTTGATGTTGGCGGTGGGACTGGAAACACAGCTAAGATCATTTGTGAGGCATTTCCACAGTTAAAATACATTGTGTTGGACCTTCCACAGGTTGTCACAGGCTTAACAGGAAACAACAACTTGAGTTTTGTTGGAGGTGACATGTTTAAATTTATCCCTCAAGCTGATGCTGTTTTACTCAAGTGGGTGTTACACAATTGGAGTGATGATGATTGCATAAAGATTCTCAAAAATTGTAAAGACGCTATTTCAGGCAACGACAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAAAGAGAGATGAGCCTGAAATGACAGAAGTAAAACTTCAGCTTGATGTGGTTATGATGACCAGTCTCAATGGAAAAGAGAGGGATGAAAAAGATTGGAAGCGACTTTTCGTGAAGGCAGGCTTCAAACATTACAAGATATTTCCCACATTTGGCTTTAGGAATGGCTACAAAGCTAGTGAATTGTTTCAAGCTCAAGCTCACTTGTACAAACACATGTATAGCTTCCTCAATCCTATGTCCATCAAGTGGGCCGTTGACCTTGGAATTCCTGATATCATTCATAATCATGGCCACCCCATTACTCTGCCACACCTTGTTTCTGCTCTTCACATTCCACAATCTAAAGCTACTTGTGTCCAACGCCTCATGCGCTTATTAGCACACATTGACTTCTTTGCAATTCTCAAAATGGATGATGGCATTGAAGCTTATGCTCTTACTCCTCCATCACAACTCCTTGTCAATGGCACTGATCACTGCCTCTCTTCAATGGTTCATTTCTTAAATAGCCCAACTCTTGTTGGTTTATACCATCAATTGGGGAATTGGACTTCTGGGGAGGACCTCACCATCGTTGAGACCGCATTAGGCTCTGGAGGTTATTGGGATTTTGTTCATCAAAATCCCGCTCATTTGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGAAGGGCTCAGTTCCTTAGTTGATGTTGGTGGTGGGACTGGAAACACAGCTAAGATTATCTGTGAGGCATTTCCACAGTTAAAATACATTGTGTTGGACCTTCCACAGGTTGTCACAGGCTTAACAGGAAACAACAACTTGAGTTTTGTTGGAGGTGACATGTTTAAATTTATCCCTCAAGCTGATGCTGTTTTACTCAAGTGGGTTTTACACAATTGGAGTGATGATGATTGCATAAAGATTCTCAAAAATTGTAAAGATGCTATCTCCGCCAAAGACAAAGGAGGAAAAGTGATCATCATAGATATAGTGATAAATGAAAAGAGAGATGAGCCTGAAATGACAGAGGTAAAACTTCTGCTTGATGTGGTTATGATGACAAGTCTCAATGGAAAAGAGAGGGATGAAAAAGATTGGAAGCGACTTTTCATAAAAGCAGGTTTCAAACATTACAAGATATTCCCCACATTTGGCTTCAGATCTCTTATTGAACTTTATCCTTAA 2034 0.4071 MYSFLNPMSIKWAVDLGIPDIIHNHGKPITLPQLVYALHIPQSKATCVQRLMRLLAHIDFFLIVKMDDGKEAYALTPPSQLLVNGTDHCLSSMVHLLNSPILVGSYHQLGKWTSGEDLTIVETALGPGGYWDFVHQNPTHLKTFNEAMESDSHVVRLALRDCKSVFEGLSSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVTGLTGNNNLSFVGGDMFKFIPQADAVLLKWVLHNWSDDDCIKILKNCKDAISGNDKGGKVIIIDIVINEKRDEPEMTEVKLQLDVVMMTSLNGKERDEKDWKRLFVKAGFKHYKIFPTFGFRNGYKASELFQAQAHLYKHMYSFLNPMSIKWAVDLGIPDIIHNHGHPITLPHLVSALHIPQSKATCVQRLMRLLAHIDFFAILKMDDGIEAYALTPPSQLLVNGTDHCLSSMVHFLNSPTLVGLYHQLGNWTSGEDLTIVETALGSGGYWDFVHQNPAHLKTFNEAMESDSHVVRLALRDCKSVFEGLSSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVTGLTGNNNLSFVGGDMFKFIPQADAVLLKWVLHNWSDDDCIKILKNCKDAISAKDKGGKVIIIDIVINEKRDEPEMTEVKLLLDVVMMTSLNGKERDEKDWKRLFIKAGFKHYKIFPTFGFRSLIELYP. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04711 677 SUPERFAMILY "Winged helix" DNA-binding domain 1 85 IPR036390 -
Seca12g04711 677 FunFam O-methyltransferase ZRP4 428 677 - -
Seca12g04711 677 FunFam O-methyltransferase ZRP4 84 330 - -
Seca12g04711 677 CDD AdoMet_MTases 516 615 - -
Seca12g04711 677 PANTHER O-METHYLTRANSFERASE 333 662 IPR016461 GO:0008168
Seca12g04711 677 FunFam Coniferyl alcohol 9-O-methyltransferase 325 426 - -
Seca12g04711 677 Pfam O-methyltransferase domain 451 659 IPR001077 GO:0008171
Seca12g04711 677 Pfam O-methyltransferase domain 119 315 IPR001077 GO:0008171
Seca12g04711 677 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 433 675 IPR029063 -
Seca12g04711 677 Pfam Dimerisation domain 8 56 IPR012967 GO:0046983
Seca12g04711 677 Pfam Dimerisation domain 352 400 IPR012967 GO:0046983
Seca12g04711 677 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 326 IPR029063 -
Seca12g04711 677 CDD AdoMet_MTases 172 271 - -
Seca12g04711 677 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 333 IPR016461 GO:0008168
Seca12g04711 677 Gene3D Vaccinia Virus protein VP39 84 327 IPR029063 -
Seca12g04711 677 Gene3D Vaccinia Virus protein VP39 428 677 IPR029063 -
Seca12g04711 677 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 342 677 IPR016461 GO:0008168
Seca12g04711 677 SUPERFAMILY "Winged helix" DNA-binding domain 332 429 IPR036390 -
Seca12g04711 677 Gene3D - 328 426 IPR036388 -
Seca12g04711 677 Gene3D - 1 82 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04711 Seca-Chr12 128237654 128245843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04711 351 675 Monolignol Biosynthesis Gene Families AT5G54160 31.157 1.61e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04711 K22588 K13262 gmx:100818947 434.106