Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g04708 | ATGAGAAAGCAAGTGTCATTCCTCTGCATTGTGTTATCAGTGTTAGCAGTAGCAACAACAAGCGTTGTGTCTCTGAACCAAGAAGGACTATACCTCTACCAATTCAAAGTCTCTTTGGACGACCCAGATTCACGATTATCCTCATGGAACCAAAGGGATAGCACCCCTTGCAACTGGTATGGTGTGAAATGTGACCCTACTAACACCTCCGTCACGGAGCTTGACCTCTCAGACACCAACATTGCCGGTCCATTCACGGCGTCAATCCTCTGCCGTTTACCCAATCTCACCTCCATCAACCTCTTCAATAACTCCATTAACGAAACCCTCCCTCTCCATATCTCCCTCTGTAACAACCTCCTCCACCTCGACCTCTCTCAGAATCTCCTCACTGGTTCTCTCCCAAACACACTTCCACTTCTCCCCAACCTCCGTTACCTTGACCTCACCGGTAACAACTTCTCCGGCCCCATTCCATCCTCCTTCGGAACATTCCAGAAACTCGAGGTACTTTCTCTAGTCTCTAACCTTCTAGAAGGTACCATACCTGCTTCCTTAGGCAACATCACTACATTGAAAATGCTCAATCTCTCTTATAACCCGTTTTTCCCGGGTCGGCTCCCACCGGAGCTTGGAAATCTAACTAACCTTGAGGTCCTCTGGCTCACCCAATGCAACCTCGTTGGTGTTATTCCTGACTCCATAGGGAACCTCAAGAAGCTTAAGGACTTGGACCTTGCTTTGAATGACCTCTATGGTTCTATTCCGAGTTCGCTCACTGGGTTAACCAGCGTGAGGCAGATTGAGTTGTATAATAACTCGTTGTCCGGTGAGTTGCCTCGGGGAATGGGGAACCTCACCGAGTTGAGGCTGCTCGACGCGTCGATGAACCACTTGACGGGGAGGATTCCAGAGGACCTTTGTTCGTTGCCGTTAGAGAGTCTCAATCTCTACGAGAACCGTTTCGAGGGGGAGTTACCCGCGAGCATAGCGAACTCGCCGAATCTCTATGAGTTGAGGTTGTTCGGGAACCGCCTCACCGGAAAATTGCCGGAAAATCTCGGGAAGCGTTCTCCTCTCAGGTGGCTTGATGTTTCCAGTAACCAGTTCTGGGGCCCCATTCCGGCGAGCCTCTGTGATCTTGGAGTGTTGGAGGAGCTTTTGATGATTTACAATTTGTTCTCCGGTGAGATTCCGGCGAGTCTGGGAACGTGTCAGAGCCTGACGCGTGTTCGGCTCGGTTTTAACCGGTTGTCCGGTGAGGTTCCGGCGGGGATCTGGGGTTTGCCGCATGTGTATCTCCTTGAACTCGCTCATAACTCGTTTTCCGGTTCCATCGCGAAGACCATTGCTGGAGCGGCGAACCTTTCGTTGTTGATTTTGTCGAAGAACAACTTCACGGGAACGATTCCTGATGAGATTGGGTGGTTGGAAGATCTCGTGGAGTTTTCTGGCGGTGATAACATGTTCAGTGGCTCGCTGCCTGATAGTATTGGGAATTTGGGGCAGCTTGGGATCCTTGATTTTCACAACAACAGGCTCTCTGGGGAGCTGCCAAAGGGAATTGGTTCTTTGAAGAAGCTCAATGATTTGAATTTGGCCAACAATGAGATTGGTGGGAAGATTCCTGATGAGATTGGGAGTTTATCTGTGCTTAATTTTCTTGATCTTTCAAGGAACCAGTTTTCAGGGAAAGTCCCTCGTGGGTTGCAGAATCTGAAGCTCAATCAGCTCAATTTGTCTTATAATCGTCTCTCTGGAGAACTTCCTCCTCTGTTGGCTAAGGAAATGTACAGGTCTAGTTTCCTGGGTAATCCTGGTTTGTGTGGGGATTTGAAAGGTTTGTGTGATGGCAGGGGTGAAGAAAAGAGTGCAGGTTATGTTTGGTTGCTTCGAGCAATTTTCATTGTTGCCATTTTGGTGTTCCTCGTGGGTGTGGTCTGGTTCTACATCAAGTATAAGAATTTCAAGGATGCAAGAAGGGCTATTGATAAATCAAAGTGGACATTGATGTCTTTTCATAAACTGGGTTTTGGTGAAGATGAGATTTTGAATTGCCTTGATGAAGATAATGTGATTGGAAGTGGTTCATCAGGGAAGGTCTATAAGGTTGTGCTTAGCAGTGGAGAGGATGTTGCTGTGAAGAAGATATGGGGAGGGGTCACGAAGGAAGTGGAGAGTGGAGATATTGAAAAGGGTAGGGTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATCAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGCACCACTAGGGACTGCAAGCTCTTGGTATACGAATATATGCCAAATGGTAGTCTTGGGGACTTGCTTCATAGCAGTAAAGGAGGATTGTTGGATTGGCCAACCAGATACAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCCATTGTTCATAGAGATGTGAAATCTAACAATATCTTGTTGGATGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTTGAAACCACAGGGAAAGGAACTAAATCCATGTCTGTCATAGCTGGATCTTGTGGGTATATTGCACCAGAATATGCATACACGCTCAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGTGTTGTCATACTTGAGTTGGTCACTGGAAGACGCCCAGTGGACCCTGAATTTGGGGAGAAGGACTTGGTTAAGTGGGTGTGCACTACCTTGGATCAGAAAGGCGTGGATCATTTACTTGACTCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATCAACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGGTAGGCTCAGAGAACCAAACGAAACCTACCAAGAAAGATGGGAAGTTATCCCCTTATTACTATGACGATGCCTCAGATCATGGAAGTGTTGCTTAA | 3003 | 0.4715 | MRKQVSFLCIVLSVLAVATTSVVSLNQEGLYLYQFKVSLDDPDSRLSSWNQRDSTPCNWYGVKCDPTNTSVTELDLSDTNIAGPFTASILCRLPNLTSINLFNNSINETLPLHISLCNNLLHLDLSQNLLTGSLPNTLPLLPNLRYLDLTGNNFSGPIPSSFGTFQKLEVLSLVSNLLEGTIPASLGNITTLKMLNLSYNPFFPGRLPPELGNLTNLEVLWLTQCNLVGVIPDSIGNLKKLKDLDLALNDLYGSIPSSLTGLTSVRQIELYNNSLSGELPRGMGNLTELRLLDASMNHLTGRIPEDLCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGKLPENLGKRSPLRWLDVSSNQFWGPIPASLCDLGVLEELLMIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELAHNSFSGSIAKTIAGAANLSLLILSKNNFTGTIPDEIGWLEDLVEFSGGDNMFSGSLPDSIGNLGQLGILDFHNNRLSGELPKGIGSLKKLNDLNLANNEIGGKIPDEIGSLSVLNFLDLSRNQFSGKVPRGLQNLKLNQLNLSYNRLSGELPPLLAKEMYRSSFLGNPGLCGDLKGLCDGRGEEKSAGYVWLLRAIFIVAILVFLVGVVWFYIKYKNFKDARRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEDVAVKKIWGGVTKEVESGDIEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVETTGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHLLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGSENQTKPTKKDGKLSPYYYDDASDHGSVA. | 1001 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g04708 | 1000 | Gene3D | Ribonuclease Inhibitor | 260 | 334 | IPR032675 | - | |
Seca12g04708 | 1000 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 819 | 831 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g04708 | 1000 | SUPERFAMILY | L domain-like | 40 | 395 | - | - | |
Seca12g04708 | 1000 | MobiDBLite | consensus disorder prediction | 975 | 989 | - | - | |
Seca12g04708 | 1000 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 775 | 984 | - | - | |
Seca12g04708 | 1000 | SUPERFAMILY | Protein kinase-like (PK-like) | 683 | 967 | IPR011009 | - | |
Seca12g04708 | 1000 | FunFam | Receptor-like protein kinase HSL1 | 671 | 774 | - | - | |
Seca12g04708 | 1000 | FunFam | Receptor-like protein kinase HSL1 | 311 | 618 | - | - | |
Seca12g04708 | 1000 | Gene3D | Ribonuclease Inhibitor | 182 | 251 | IPR032675 | - | |
Seca12g04708 | 1000 | Gene3D | Transferase(Phosphotransferase) domain 1 | 775 | 994 | - | - | |
Seca12g04708 | 1000 | MobiDBLite | consensus disorder prediction | 970 | 1000 | - | - | |
Seca12g04708 | 1000 | SUPERFAMILY | L domain-like | 350 | 609 | - | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 549 | 572 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 141 | 167 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 238 | 262 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 93 | 117 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 286 | 310 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 501 | 525 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | LRR_typ_2 | 214 | 237 | IPR003591 | - | |
Seca12g04708 | 1000 | SMART | serkin_6 | 687 | 967 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04708 | 1000 | Gene3D | Ribonuclease Inhibitor | 335 | 618 | IPR032675 | - | |
Seca12g04708 | 1000 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 234 | 969 | - | - | |
Seca12g04708 | 1000 | Gene3D | Phosphorylase Kinase; domain 1 | 671 | 774 | - | - | |
Seca12g04708 | 1000 | FunFam | Leucine-rich receptor-like protein kinase family protein | 207 | 305 | - | - | |
Seca12g04708 | 1000 | Pfam | Leucine Rich Repeat | 143 | 163 | IPR001611 | GO:0005515 | |
Seca12g04708 | 1000 | ProSiteProfiles | Leucine-rich repeat profile. | 119 | 141 | IPR001611 | GO:0005515 | |
Seca12g04708 | 1000 | Pfam | Protein kinase domain | 689 | 908 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04708 | 1000 | ProSitePatterns | Protein kinases ATP-binding region signature. | 693 | 716 | IPR017441 | GO:0005524 | |
Seca12g04708 | 1000 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 25 | 189 | - | - | |
Seca12g04708 | 1000 | Gene3D | Ribonuclease Inhibitor | 25 | 181 | IPR032675 | - | |
Seca12g04708 | 1000 | ProSiteProfiles | Protein kinase domain profile. | 687 | 970 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04708 | 1000 | Pfam | Leucine rich repeat N-terminal domain | 26 | 65 | IPR013210 | - | |
Seca12g04708 | 1000 | Pfam | Leucine rich repeat | 216 | 275 | IPR001611 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g04708 | Seca-Chr12 | 128153144 | 128156635 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g04708 | 21 | 1000 | Receptor kinase-like Gene Family | AT1G28440 | 71.631 | 0.0 | 1431 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca12g04708 | Pkinase | 6.6e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g04708 | - | - | gmx:100819887 | 1722.21 |