Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04708 ATGAGAAAGCAAGTGTCATTCCTCTGCATTGTGTTATCAGTGTTAGCAGTAGCAACAACAAGCGTTGTGTCTCTGAACCAAGAAGGACTATACCTCTACCAATTCAAAGTCTCTTTGGACGACCCAGATTCACGATTATCCTCATGGAACCAAAGGGATAGCACCCCTTGCAACTGGTATGGTGTGAAATGTGACCCTACTAACACCTCCGTCACGGAGCTTGACCTCTCAGACACCAACATTGCCGGTCCATTCACGGCGTCAATCCTCTGCCGTTTACCCAATCTCACCTCCATCAACCTCTTCAATAACTCCATTAACGAAACCCTCCCTCTCCATATCTCCCTCTGTAACAACCTCCTCCACCTCGACCTCTCTCAGAATCTCCTCACTGGTTCTCTCCCAAACACACTTCCACTTCTCCCCAACCTCCGTTACCTTGACCTCACCGGTAACAACTTCTCCGGCCCCATTCCATCCTCCTTCGGAACATTCCAGAAACTCGAGGTACTTTCTCTAGTCTCTAACCTTCTAGAAGGTACCATACCTGCTTCCTTAGGCAACATCACTACATTGAAAATGCTCAATCTCTCTTATAACCCGTTTTTCCCGGGTCGGCTCCCACCGGAGCTTGGAAATCTAACTAACCTTGAGGTCCTCTGGCTCACCCAATGCAACCTCGTTGGTGTTATTCCTGACTCCATAGGGAACCTCAAGAAGCTTAAGGACTTGGACCTTGCTTTGAATGACCTCTATGGTTCTATTCCGAGTTCGCTCACTGGGTTAACCAGCGTGAGGCAGATTGAGTTGTATAATAACTCGTTGTCCGGTGAGTTGCCTCGGGGAATGGGGAACCTCACCGAGTTGAGGCTGCTCGACGCGTCGATGAACCACTTGACGGGGAGGATTCCAGAGGACCTTTGTTCGTTGCCGTTAGAGAGTCTCAATCTCTACGAGAACCGTTTCGAGGGGGAGTTACCCGCGAGCATAGCGAACTCGCCGAATCTCTATGAGTTGAGGTTGTTCGGGAACCGCCTCACCGGAAAATTGCCGGAAAATCTCGGGAAGCGTTCTCCTCTCAGGTGGCTTGATGTTTCCAGTAACCAGTTCTGGGGCCCCATTCCGGCGAGCCTCTGTGATCTTGGAGTGTTGGAGGAGCTTTTGATGATTTACAATTTGTTCTCCGGTGAGATTCCGGCGAGTCTGGGAACGTGTCAGAGCCTGACGCGTGTTCGGCTCGGTTTTAACCGGTTGTCCGGTGAGGTTCCGGCGGGGATCTGGGGTTTGCCGCATGTGTATCTCCTTGAACTCGCTCATAACTCGTTTTCCGGTTCCATCGCGAAGACCATTGCTGGAGCGGCGAACCTTTCGTTGTTGATTTTGTCGAAGAACAACTTCACGGGAACGATTCCTGATGAGATTGGGTGGTTGGAAGATCTCGTGGAGTTTTCTGGCGGTGATAACATGTTCAGTGGCTCGCTGCCTGATAGTATTGGGAATTTGGGGCAGCTTGGGATCCTTGATTTTCACAACAACAGGCTCTCTGGGGAGCTGCCAAAGGGAATTGGTTCTTTGAAGAAGCTCAATGATTTGAATTTGGCCAACAATGAGATTGGTGGGAAGATTCCTGATGAGATTGGGAGTTTATCTGTGCTTAATTTTCTTGATCTTTCAAGGAACCAGTTTTCAGGGAAAGTCCCTCGTGGGTTGCAGAATCTGAAGCTCAATCAGCTCAATTTGTCTTATAATCGTCTCTCTGGAGAACTTCCTCCTCTGTTGGCTAAGGAAATGTACAGGTCTAGTTTCCTGGGTAATCCTGGTTTGTGTGGGGATTTGAAAGGTTTGTGTGATGGCAGGGGTGAAGAAAAGAGTGCAGGTTATGTTTGGTTGCTTCGAGCAATTTTCATTGTTGCCATTTTGGTGTTCCTCGTGGGTGTGGTCTGGTTCTACATCAAGTATAAGAATTTCAAGGATGCAAGAAGGGCTATTGATAAATCAAAGTGGACATTGATGTCTTTTCATAAACTGGGTTTTGGTGAAGATGAGATTTTGAATTGCCTTGATGAAGATAATGTGATTGGAAGTGGTTCATCAGGGAAGGTCTATAAGGTTGTGCTTAGCAGTGGAGAGGATGTTGCTGTGAAGAAGATATGGGGAGGGGTCACGAAGGAAGTGGAGAGTGGAGATATTGAAAAGGGTAGGGTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATCAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGCACCACTAGGGACTGCAAGCTCTTGGTATACGAATATATGCCAAATGGTAGTCTTGGGGACTTGCTTCATAGCAGTAAAGGAGGATTGTTGGATTGGCCAACCAGATACAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCCATTGTTCATAGAGATGTGAAATCTAACAATATCTTGTTGGATGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTTGAAACCACAGGGAAAGGAACTAAATCCATGTCTGTCATAGCTGGATCTTGTGGGTATATTGCACCAGAATATGCATACACGCTCAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGTGTTGTCATACTTGAGTTGGTCACTGGAAGACGCCCAGTGGACCCTGAATTTGGGGAGAAGGACTTGGTTAAGTGGGTGTGCACTACCTTGGATCAGAAAGGCGTGGATCATTTACTTGACTCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATCAACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGGTAGGCTCAGAGAACCAAACGAAACCTACCAAGAAAGATGGGAAGTTATCCCCTTATTACTATGACGATGCCTCAGATCATGGAAGTGTTGCTTAA 3003 0.4715 MRKQVSFLCIVLSVLAVATTSVVSLNQEGLYLYQFKVSLDDPDSRLSSWNQRDSTPCNWYGVKCDPTNTSVTELDLSDTNIAGPFTASILCRLPNLTSINLFNNSINETLPLHISLCNNLLHLDLSQNLLTGSLPNTLPLLPNLRYLDLTGNNFSGPIPSSFGTFQKLEVLSLVSNLLEGTIPASLGNITTLKMLNLSYNPFFPGRLPPELGNLTNLEVLWLTQCNLVGVIPDSIGNLKKLKDLDLALNDLYGSIPSSLTGLTSVRQIELYNNSLSGELPRGMGNLTELRLLDASMNHLTGRIPEDLCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGKLPENLGKRSPLRWLDVSSNQFWGPIPASLCDLGVLEELLMIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELAHNSFSGSIAKTIAGAANLSLLILSKNNFTGTIPDEIGWLEDLVEFSGGDNMFSGSLPDSIGNLGQLGILDFHNNRLSGELPKGIGSLKKLNDLNLANNEIGGKIPDEIGSLSVLNFLDLSRNQFSGKVPRGLQNLKLNQLNLSYNRLSGELPPLLAKEMYRSSFLGNPGLCGDLKGLCDGRGEEKSAGYVWLLRAIFIVAILVFLVGVVWFYIKYKNFKDARRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEDVAVKKIWGGVTKEVESGDIEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVETTGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHLLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGSENQTKPTKKDGKLSPYYYDDASDHGSVA. 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04708 1000 Gene3D Ribonuclease Inhibitor 260 334 IPR032675 -
Seca12g04708 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Seca12g04708 1000 SUPERFAMILY L domain-like 40 395 - -
Seca12g04708 1000 MobiDBLite consensus disorder prediction 975 989 - -
Seca12g04708 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 984 - -
Seca12g04708 1000 SUPERFAMILY Protein kinase-like (PK-like) 683 967 IPR011009 -
Seca12g04708 1000 FunFam Receptor-like protein kinase HSL1 671 774 - -
Seca12g04708 1000 FunFam Receptor-like protein kinase HSL1 311 618 - -
Seca12g04708 1000 Gene3D Ribonuclease Inhibitor 182 251 IPR032675 -
Seca12g04708 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 994 - -
Seca12g04708 1000 MobiDBLite consensus disorder prediction 970 1000 - -
Seca12g04708 1000 SUPERFAMILY L domain-like 350 609 - -
Seca12g04708 1000 SMART LRR_typ_2 549 572 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 141 167 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 238 262 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 93 117 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 286 310 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 501 525 IPR003591 -
Seca12g04708 1000 SMART LRR_typ_2 214 237 IPR003591 -
Seca12g04708 1000 SMART serkin_6 687 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04708 1000 Gene3D Ribonuclease Inhibitor 335 618 IPR032675 -
Seca12g04708 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 234 969 - -
Seca12g04708 1000 Gene3D Phosphorylase Kinase; domain 1 671 774 - -
Seca12g04708 1000 FunFam Leucine-rich receptor-like protein kinase family protein 207 305 - -
Seca12g04708 1000 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515
Seca12g04708 1000 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Seca12g04708 1000 Pfam Protein kinase domain 689 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04708 1000 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Seca12g04708 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 25 189 - -
Seca12g04708 1000 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Seca12g04708 1000 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04708 1000 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Seca12g04708 1000 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04708 Seca-Chr12 128153144 128156635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04708 21 1000 Receptor kinase-like Gene Family AT1G28440 71.631 0.0 1431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca12g04708 Pkinase 6.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04708 - - gmx:100819887 1722.21