Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04707 ATGACATGGTGCAATGACTCAGAAGAGGAGAGGGGGATTGAACTGATAACACCCACTACTAGTGCTATTCCTAGTAACACTCTTGTTACTGATGAAACAAAACCAACCGAAATCCGAAACATAACTTGCCCCTCATGTGGTCATAACATTGAATTAAAAGATCAGGCTGGAATCAATGACTTGCCGGGGTTACCAGCTGGGGTGAAATTTGATCCGAATGATCAGGAGATTCTAGAACATTTGGAAGCAAAGGTGCTCTCTGATGTGCGCAAGCTTCATCCTCTTATTGATGAGTTCATACCAACTCTTGAAGGAGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTAAGCAAAGATGGACAGATCCGCCACTTTTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAAACAAGGTGGCACAAAACAGGCAAAACAAGACCAGTTTTTGTAGGTGGAGCTGTGAAGGGTTTCAAAAAGATACTAGTTCTCTACACCAACTATGGAAGGCAAAAGAAGCCAGAGAAGACAAACTGGGTAATGCATCAATACCACCTTGGAAGTAATGAAGAAGAGAAAGATGGAGAATTAGTGGTTTCAAAGGTGTTCTACCAAACACAACCTCGACAATGTGGTACTTCCATTATAAAAGAGCCTTATGATCATAACACTCACCGAAGTGTCGTCCAAGATGATCATCACAATATGATGATGCCTAAAACTGCAGCTCTTGTGGACTATTACAACACTACTACTCCTTTCATGAATTATGAGCATGTGGGTATGAGTCATAACATGGAAAGCGCACCACAACTTATACCAAACTTGGTTGTGCAAGGTGATAGCTCTTCTTTTATTCGACTAGCAATGGATGCAAACAAAGCCATGCTGGACAGAAAATAG 957 0.4169 MTWCNDSEEERGIELITPTTSAIPSNTLVTDETKPTEIRNITCPSCGHNIELKDQAGINDLPGLPAGVKFDPNDQEILEHLEAKVLSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTSIIKEPYDHNTHRSVVQDDHHNMMMPKTAALVDYYNTTTPFMNYEHVGMSHNMESAPQLIPNLVVQGDSSSFIRLAMDANKAMLDRK. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04707 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 25 277 IPR044799 GO:0003700
Seca12g04707 318 ProSiteProfiles NAC domain profile. 64 223 IPR003441 GO:0003677|GO:0006355
Seca12g04707 318 FunFam NAC domain-containing protein 73 73 227 - -
Seca12g04707 318 SUPERFAMILY NAC domain 59 223 IPR036093 GO:0003677|GO:0006355
Seca12g04707 318 Gene3D NAC domain 73 227 IPR036093 GO:0003677|GO:0006355
Seca12g04707 318 Pfam No apical meristem (NAM) protein 65 204 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04707 Seca-Chr12 128099684 128102535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04707 1 233 NAC Transcription Factor Family AT4G28500 73.077 1.60e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g04707 NAM 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04707 - - vra:106766970 539.65