Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04698 ATGGCGGGTTTGATTGATCTCAACACCACAGAGGACGATGAAACGCCGTCGTCTGGTTCCTCCTCTGGCACTAGCATGAGTACTACTCATGCCTCTGGTTCTGGTTCCTCTGTGTGCTTGGAGCTCTGGCACGCTTGTGCGGGTCCAATGATCTCTTTGCCGAAGAAAGGAAGCGTGGTTGTGTACTTCCCTCAGGGACACTTGGAGCATCTTCAGGATTTTCCGCTCTCTTTCTGTGATAACATTCCTTCCCATGTGTTCTGTCGCGTTGTTGATGTCAAGCTTCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGTTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAGCAAAAGTTCCTTGAAGGGGAAGTTGATGCTGATGGTGAAGAGGAGGATACTGAAGCTGTGATGAAGTCAACAACACCCCACATGTTCTGCAAGACTCTCACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTTCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCCTCACAAGAGCTTGTGGCAAAGGATCTTCATGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGGCAACCACGAAGACATTTGCTTACAACTGGATGGAGTGCTTTTGTGAACAAGAAGAAGCTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGGGAACTGAGATTGGGGATTCGCAGGGCAGCTCAATTGAAAAATGGCAGCACCTTTTCAGCTCTCTCTGGCCAGCAGTTGAATCTTAGCAGTCTTACGGATGTGGTTAATGCTTTATCTACAAGATGTGCCTTTAGCATTCACTACAATCCGAGGGTCAGCTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTAGTTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCCGGATCAAAATGGAAATGCCTTCTGGTAAGGTGGGATGACTTAGAAGGCACAAGGCATAATAGAGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGGTTCCACTGCCAATAACTTTATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCAAAGCTAGAATTTCCAGTTCCCAATAGGATTGGGACATCAGACTTTGGGGAATCACTAGGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGCTGATACTACTTTTGATAGTATTAGTGCTCAGAGTCACCAGTTATCTGAATTCAGGAGGTGTTATCCTGGTTCAAACTTTCCTGGGATTGCTCCAACAGGAAATAGCATCAGATTCCCACAAATGACTTCTGATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTTAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTATTGATGAGGCTTGTGGAAATGGTCGCTTTGGACTTTCTGATGGTTACCAGGTGCTGAGATCCAGAAATGGATGGCCTGCCCATATGAATAACAATTCTTCACATTTGCATCAATCTATTCCAGCTGTGCAAGTTTCATCTCCATCATCTGTGTTAATGTTTCAGCAAGGAGTTAATCCAGTTTCAAACTCAGATTACAGTAACAAAATTAATCAGGTGATGGAGGGTAAAGTTCATCATCGAGGTTCATATGCTTCTGAAGTGAAAGGTGGAACCTTTGTATCAACCCCCTCTTATGAGCCTATTTACCATGGACTAGCTCAGGAAGGCGCAAATTCTTTCGGTGTTTCAAATTTGCACAACCAGTTGGATAGCTCACATTCACATGATTCAGTTTCAGTTATGAGGAGCCGTCAAGAGTTAGTTCCCTCATGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTGACTGAGGGTGCTCCAATTGCAAATAAAGAGGCTGATTCATCTACAGTCACTTGTCAACTAAATTCTGGACCTTCCTTTACAAGACATGTTGAAGATGATTTCCATCCAAGGCATTCACTTAGGAGCAAGGAAGTTGGAAGTTATTGTACCAAAGGTGTGCTGCAGTATTGA 2175 0.4446 MAGLIDLNTTEDDETPSSGSSSGTSMSTTHASGSGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLQDFPLSFCDNIPSHVFCRVVDVKLHAEEGSDEVYCQLLLVPESEQVQQKFLEGEVDADGEEEDTEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNGSTFSALSGQQLNLSSLTDVVNALSTRCAFSIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDAAERRFTGLVVGIADVDPVRWPGSKWKCLLVRWDDLEGTRHNRVSPWEIEPSGSGSTANNFMAASLKRTKIGLPSAKLEFPVPNRIGTSDFGESLGFQKVLQGQEILGADTTFDSISAQSHQLSEFRRCYPGSNFPGIAPTGNSIRFPQMTSDVSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSIDEACGNGRFGLSDGYQVLRSRNGWPAHMNNNSSHLHQSIPAVQVSSPSSVLMFQQGVNPVSNSDYSNKINQVMEGKVHHRGSYASEVKGGTFVSTPSYEPIYHGLAQEGANSFGVSNLHNQLDSSHSHDSVSVMRSRQELVPSCKSSCRVFGFSLTEGAPIANKEADSSTVTCQLNSGPSFTRHVEDDFHPRHSLRSKEVGSYCTKGVLQY. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04698 724 FunFam Auxin response factor 145 249 - -
Seca12g04698 724 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca12g04698 724 SUPERFAMILY DNA-binding pseudobarrel domain 139 255 IPR015300 -
Seca12g04698 724 FunFam Auxin response factor 310 381 - -
Seca12g04698 724 Pfam Auxin response factor 274 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca12g04698 724 CDD B3_DNA 145 247 IPR003340 GO:0003677
Seca12g04698 724 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Seca12g04698 724 Gene3D - 310 383 - -
Seca12g04698 724 MobiDBLite consensus disorder prediction 10 30 - -
Seca12g04698 724 Gene3D - 145 249 IPR015300 -
Seca12g04698 724 MobiDBLite consensus disorder prediction 1 30 - -
Seca12g04698 724 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Seca12g04698 724 SMART B3_2 147 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04698 Seca-Chr12 127800738 127807581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04698 33 501 B3 DNA Binding Superfamily AT5G60450 51.340 8.90e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca12g04698 B3 9.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04698 K14486 - gmx:100808119 1187.94