Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04697 ATGGATTTCAATACCACCAACGGTACTGAAGAAAGTGAACTGTACCATGCTCAAATCCATTTGTACAAGCATGTATACAACTTTGTTAGTTCCATGGCTCTCAAATCTGTTATGGAATTAGGCATAGCAGATGTAATCCACAACCATGGAAAACCCATCACTCTTCCTGAATTAGCCTCAGCTTTGAAACTCCACCCTTCTAAAGTCGGTGTCCTCCATCGCTTCTTGCGCCTTCTAACACACAATGGATTCTTTGCCAAAACGACAGTTCCATCACAAAACGGCAAAGAAGGGGAAGAGGAAACAGCATATGTTCTTACTCCTCCATCTAAGCTTCTCATAAGAGGCAAATCAACTTGTTTAGCACCAATTGTTAAGGGAGCACTTCATTCAAGCTCTCTTGACATGTGGCACTCCTCCAAGAAATGGTTCACTGAGGAGAAAGAACTCACCCTGTTTGAGAGTGCAACAGGGGAGAGTTTCTGGGACTTTTTGAACAAAGAATCTGAATCTGATACATTGAGCATGTTTCAAGAGGCTATGGCTGCTGATTCCCAAATGTTCAAGCTAGCCATCAAGGAGTGTAGGCATGTGTTTGAGGGTTTGGGTTCTCTAGTCGATGTGGGAGGTGGAACTGGAGGTGTTACAAAGCTCATCCATGAAGAATTCCCTAACCTAAAATGCACTGTGTTTGATCAACCACAGGTTGTGGCTAATTTGACTGGAAATGAAAATTTGAATTTTGTTGGTGGAGATATGTTCAAGTCTGTTCCCTCTGCTGATGCAGTTTTATTGAAGTGGGTTCTGCATGACTGGAATGATGAGCTTTCCTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCGGGGAAAGGGAAAGATGGAAAGGTGATTATCATAGACATATCAATTGATGAAGAAAGTGATAATCGCCAATTGACAGAGTTGCAATTGGACTATGACTTGGTGATGTTGACTATGTTTAATGGGAAAGAAAGGACTAAGAAAGAATGGGAGAAACTCATATATGAGGCAGGTTTCAGCAGCTACAAGATTACCCCCATTTGCGGCTTCAAGTCTCTCATTGAAGTTTATCCTTAA 1101 0.4142 MDFNTTNGTEESELYHAQIHLYKHVYNFVSSMALKSVMELGIADVIHNHGKPITLPELASALKLHPSKVGVLHRFLRLLTHNGFFAKTTVPSQNGKEGEEETAYVLTPPSKLLIRGKSTCLAPIVKGALHSSSLDMWHSSKKWFTEEKELTLFESATGESFWDFLNKESESDTLSMFQEAMAADSQMFKLAIKECRHVFEGLGSLVDVGGGTGGVTKLIHEEFPNLKCTVFDQPQVVANLTGNENLNFVGGDMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKDGKVIIIDISIDEESDNRQLTELQLDYDLVMLTMFNGKERTKKEWEKLIYEAGFSSYKITPICGFKSLIEVYP. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04697 366 FunFam O-methyltransferase ZRP4 116 366 - -
Seca12g04697 366 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Seca12g04697 366 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Seca12g04697 366 Gene3D - 3 113 IPR036388 -
Seca12g04697 366 PANTHER O-METHYLTRANSFERASE 16 351 IPR016461 GO:0008168
Seca12g04697 366 Pfam O-methyltransferase domain 137 348 IPR001077 GO:0008171
Seca12g04697 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 366 IPR016461 GO:0008168
Seca12g04697 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 365 IPR029063 -
Seca12g04697 366 Gene3D Vaccinia Virus protein VP39 114 366 IPR029063 -
Seca12g04697 366 SUPERFAMILY "Winged helix" DNA-binding domain 11 117 IPR036390 -
Seca12g04697 366 FunFam Coniferyl alcohol 9-O-methyltransferase 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04697 Seca-Chr12 127669294 127671361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04697 29 353 Monolignol Biosynthesis Gene Families AT5G54160 33.537 4.17e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04697 K22588 - gmx:100807589 593.578