Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04688 ATGGGTTCCGACAATGGCTACCAAGCAAGAGAGCTGTTTCAAGCACAGGCTCACTTGTATGATCACATCCTTAGCTTCCTTAAACCCATGTCCATTAAATGGGCAGTTGATCTTGACATACCAAATATCATCCACAATCATGCCCAACCCATTACTCTGCCCCAATTGGTCTCTGCTCTTCAAATTCCACAAACAAAGGCTGAGCTTGTTCAACACCTTATGCGTTTATTGGTACACAATAACTTCTTTACAATTATCAAAATGGATGACAACAACGAAGCATATGCTCTCACTCCAACTTCAGAGCTCCTTGTCAAAGGCACTAACCATTGTTTATCTTCAATGGTTAAATTGCTAACCAACCCAGCTTCCGTTGATTTATATAATCATTTAGCTAAGTGGACTACAGGGGAGGGGCAAACAATCTATGAGACCGCATTAGGCCAAGGAGACTTTTGGAGTTTTGTTCATCAAGATCCCGCACACTTGAACTCCTTCAATGAGGCCATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGGAGGCCTCAATTCCTTAGTTGATGTTGGTGGTGGAACGGGAAACACAGCTAAAATTATTTGTGAGGCATTTCCTATGTTAAAGTGCACAGTGTTGGACCTTCCACAAGTTGTTAATGGTTTAACAGGAAGCAACAATTTGAGTTATGTTGGTGGCAACATGTTTAAATCTATCCCTCAAGCAGATGCAATTTTACTCAAGTGGATTTTACATGACTGGAGTGATGATGATTGTGTAAAGATACTTAAAAATTGTAAAGAAGTTATTTCAAGAAACAGAAAAGGAGGAAAAGTGATCATAATAGATATTGTGATAAATGAAAAGAAAGATGAGCATGAAATGACTGAAGTCAAGCTCTTCTTTGACATAATTATGATGGCTACTTTCAATGCAAAGGAAAGAGACGAAAAAAATTGGAAGCAACTCTTTGCACAGGCGGGCTTCACACATTATAAAATATTTCCCATATTTGGTTTTAGATCACTTATTGAGCTTTATCCTTAA 1068 0.3848 MGSDNGYQARELFQAQAHLYDHILSFLKPMSIKWAVDLDIPNIIHNHAQPITLPQLVSALQIPQTKAELVQHLMRLLVHNNFFTIIKMDDNNEAYALTPTSELLVKGTNHCLSSMVKLLTNPASVDLYNHLAKWTTGEGQTIYETALGQGDFWSFVHQDPAHLNSFNEAMESDSHVVRLALRDCKSVFGGLNSLVDVGGGTGNTAKIICEAFPMLKCTVLDLPQVVNGLTGSNNLSYVGGNMFKSIPQADAILLKWILHDWSDDDCVKILKNCKEVISRNRKGGKVIIIDIVINEKKDEHEMTEVKLFFDIIMMATFNAKERDEKNWKQLFAQAGFTHYKIFPIFGFRSLIELYP. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04688 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Seca12g04688 355 FunFam Coniferyl alcohol 9-O-methyltransferase 3 104 - -
Seca12g04688 355 PANTHER O-METHYLTRANSFERASE 11 340 IPR016461 GO:0008168
Seca12g04688 355 FunFam O-methyltransferase ZRP4 106 355 - -
Seca12g04688 355 Gene3D Vaccinia Virus protein VP39 105 355 IPR029063 -
Seca12g04688 355 PIRSF O-mtase 2 355 IPR016461 GO:0008168
Seca12g04688 355 Pfam O-methyltransferase domain 128 336 IPR001077 GO:0008171
Seca12g04688 355 Gene3D - 2 104 IPR036388 -
Seca12g04688 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Seca12g04688 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca12g04688 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 353 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04688 Seca-Chr12 127420395 127421673 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04688 29 353 Monolignol Biosynthesis Gene Families AT5G54160 33.136 4.01e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04688 K22588 K13262 gmx:100818947 416.001