Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04683 ATGGGTTCCAAGAATGGTTACCAAGCAAGTGAGCTGTTTCAAGCTCAGGCTCACTTGTATGATCACATCCTTAGCTTCCTAAAACCCATGTCCATCAAATGGGCAGTTGACCTTGTCATACCAGATACCATCCACAATCATGGCCAACCCATTACTCTGGCCCAACTAGTCTCTGCTCTTCAAATTCCACAAACAAAGGCGACTTGTGTTCAACACCTCATGCGTTTATTGGCACACAATAACTTCTTTACAATTATCAAAGTGGCCACACAAGCATATGCTCTTACTCCAGCATCAGAGCTCCTTGTTAAAGGTACTAACCATTGTTTATCTTCAATGGTTAAATTGCTAACTAACCCAACTCTTGTTGGTTTATATAATCATTTGGGTAAAAGGACTACTGGAGAGGAGCACACAATCTATGAGACTACATTAGGCCCAGGAGACTATTGGGATTTTATTCACAAAGATCCCACACATTTGAAGTCCTTCAATGAGGCTAAGGAAAGTGATTCTCAAGTGGTGAGGTTGGCACTCAGAGATTGCAAATCAGTTTTTGAGGGATTGGGTTCTCTGGTTGATGTTGGAGGTGGAACTGGAAACACAGCTAAAATTATTTGTGAGGCATTTCCTATGTTAAAGTGCACAGTATTGGACCTTCCACAAGTTGTTAATGGTTTAACAGGAAGCAACAATTTGAGTTATGTTGGCGGCAACATGTTTAAATTTATCCCTCAAGCTGATGCATGGATTTTACATGATTGGAACGATGATGACTGTGTAAAGATCCTTAAAAATTGTAGAGAAGCTGTTTCAAAAAATGGAAAAGGAGGAAAAGTGATCATAATAGATATTGTGATAAATGAAAAGCAAGATGAGCATGAAATGACAGAAGTCAAGCTCTTCTTTGACATAATTATGATGGCCAGTTTCAGTGCAAAGGAGAGAGACGAAAAAAATTGGAAGCAGCTCTTTGCAGAAGCAGGCTTTACATGTTATAAAATATTTCCTATATTTGGTTTTAGATCACTTATTGAGCTTTATCTTTGA 1050 0.3876 MGSKNGYQASELFQAQAHLYDHILSFLKPMSIKWAVDLVIPDTIHNHGQPITLAQLVSALQIPQTKATCVQHLMRLLAHNNFFTIIKVATQAYALTPASELLVKGTNHCLSSMVKLLTNPTLVGLYNHLGKRTTGEEHTIYETTLGPGDYWDFIHKDPTHLKSFNEAKESDSQVVRLALRDCKSVFEGLGSLVDVGGGTGNTAKIICEAFPMLKCTVLDLPQVVNGLTGSNNLSYVGGNMFKFIPQADAWILHDWNDDDCVKILKNCREAVSKNGKGGKVIIIDIVINEKQDEHEMTEVKLFFDIIMMASFSAKERDEKNWKQLFAEAGFTCYKIFPIFGFRSLIELYL. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04683 349 Pfam O-methyltransferase domain 128 330 IPR001077 GO:0008171
Seca12g04683 349 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca12g04683 349 FunFam O-methyltransferase ZRP4 104 349 - -
Seca12g04683 349 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 349 IPR016461 GO:0008168
Seca12g04683 349 Gene3D Vaccinia Virus protein VP39 103 348 IPR029063 -
Seca12g04683 349 Gene3D - 2 102 IPR036388 -
Seca12g04683 349 SUPERFAMILY "Winged helix" DNA-binding domain 9 106 IPR036390 -
Seca12g04683 349 FunFam Coniferyl alcohol 9-O-methyltransferase 3 102 - -
Seca12g04683 349 PIRSF O-mtase 2 349 IPR016461 GO:0008168
Seca12g04683 349 PANTHER O-METHYLTRANSFERASE 11 332 IPR016461 GO:0008168
Seca12g04683 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 347 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04683 Seca-Chr12 127106122 127115011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04683 29 347 Monolignol Biosynthesis Gene Families AT5G54160 30.330 8.67e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04683 K22588 K13262 gmx:100818947 389.037