Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04673 ATGGAGTGCCCGTACGCGTCTCGCGGATCATGGACTCCATTGGGGTCACAATTGCAGCTTACACCAGGAAATTGTTTAGAAATCCGCATTGCAATTTGGTCTCACACCAATACAATGTTATTTTCAACAGAACCTCGCACTTTCAAATACATAGAAACTGAAGGGTTTTTACAAGAAATCAGAGATTTCATAATAACATCCCTTAGCAGCCCACAATTTGGCTCTGTATCTGTCCAACAAGCAACAGATGTGGCAATAACTGCAATTCAACGAGGGTTCCAGTTTGACCACAACCTTGCTAATGCTAATTCTGAATCATTACCCCAATCCAAGGAGTTGTCTTTACTTTTGGGAGTCAGGCTACCTGAACCTACTTATACACATCCCGCATCTAAGGAAGCCATAAAAAAGTCACTGAAGAAAGTTAAGGTTACTGAACTGAATCAGTGTTGTGCTATTTGCATGGAGGAGTTTCAAATCGGTGGTGCTGATGGTAATAACAAGGCAGATGAGAGCTACTCAATGCCCTGTTCTCATGTGTTTCATCCAACCTGTATTGTGACCTGGTTGAACAGGAGTAATATGTGTCCATTGTGTCGCTATCCTTTGCCAACTGTCAATGAAGAGATGAATGATAAGGTGACCTGTTGCACTTTTATTAGTTCTATAATTAGGTCCATTTTTCGTTTTCTCTAA 696 0.4109 MECPYASRGSWTPLGSQLQLTPGNCLEIRIAIWSHTNTMLFSTEPRTFKYIETEGFLQEIRDFIITSLSSPQFGSVSVQQATDVAITAIQRGFQFDHNLANANSESLPQSKELSLLLGVRLPEPTYTHPASKEAIKKSLKKVKVTELNQCCAICMEEFQIGGADGNNKADESYSMPCSHVFHPTCIVTWLNRSNMCPLCRYPLPTVNEEMNDKVTCCTFISSIIRSIFRFL. 232
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04673 231 SMART ring_2 151 199 IPR001841 -
Seca12g04673 231 ProSiteProfiles Zinc finger RING-type profile. 151 200 IPR001841 -
Seca12g04673 231 Pfam RING-H2 zinc finger domain 150 200 IPR024766 GO:0008270
Seca12g04673 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 206 IPR013083 -
Seca12g04673 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 204 - -
Seca12g04673 231 SUPERFAMILY RING/U-box 144 207 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g04673 Seca-Chr12 126931292 126931987 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04673 129 205 C3H Transcription Factor Family AT3G14970 44.156 7.85e-13 63.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04673 - K22378 ccaj:109804929 105.145