Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04671 ATGTACCATCATCACCAACATCAAGGGAAATACATTCATGCTTCTTCAAGAATGCCAATCCTTTCTGAGAGGCATATGTTCCTTCAAACAGGAAATGGGTCTAGTGATTCTGGACTTGTGCTCTCAACTGATACAAAGCCTAGATTAAAATGGACACTTGATCTTCATACCAGGTTTATAGAAGCAGTCAATCAATTAGGTGGAGCTGACAGTGAGTATACACATCCACTTGTGGATCATCAAATCTTGAGCAATATAGAACTTGAATTCACTAATGCAAAGTACAATCTTTCTATTCCAGAGGCAACTCCAAAAATGGTAATGAAACTCTTGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACATGACACACAAAATCACAACAAATGCAGGTGCAGGAAGTGAAGAGAGACTTTCTGAAACCAATGGAACTCACATGAATAAATTAAGCCTTGGACCGCAGCCTAACAAAGATTTAGATATAAGCGAGGCACTACAGATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAGAGACACTTGCAGGTTCGGATAGAAGCACAAGGGAAGTACCTTCAGTCTGTGCTGGAGAAAGCACATGAGACTCTTGGTAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTTTCAGAGCTTGTATCCAAAGTATCCTCTCAGTGCCTGAACTCAGCACTTTCAGAGCTAAAGGAACTACAAGGATTTTGCCCCCAGCAAACACAAACCAACCAGCCAAATGACTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAACAAGATATTCAAAATGGGGGCATTGGGTTAAGACACTTCAATGGACACATATTCATGGAACAAAAGGAAGCTCCCAACCTTAGGAACCCTGAACTCAAGTGGTGTGATGAAGTGAAAAAGAACAACACTTTTCTCACCCCATTAGGTAAGAATGAAGAAAGAACTAGTTATGGTGTTGAAAGCAGTCCCAACAAGTTATCTATGACTATTGGACTTGAAAGAGAAACAGAGAATGGCATCAGCATATACCCTCCTGAGAGAGTAATCACAGAAAGTCACTCAGATGGTGAATTCCAGCACAGGAACACAACTAGGACAGAAACAATTAAACAAGTGGATGATAGGTTGCCTTCTTACTCTGCAGCAGCAAGATTATTGGACCTCAACACCCATGGAGACAGTGAAGCTACAACCAGTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1344 0.4122 MYHHHQHQGKYIHASSRMPILSERHMFLQTGNGSSDSGLVLSTDTKPRLKWTLDLHTRFIEAVNQLGGADSEYTHPLVDHQILSNIELEFTNAKYNLSIPEATPKMVMKLLGIPGLTLYHLKSHLQKYRLSKNLHGQSNNMTHKITTNAGAGSEERLSETNGTHMNKLSLGPQPNKDLDISEALQMQIEVQRRLNEQLEVQRHLQVRIEAQGKYLQSVLEKAHETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSALSELKELQGFCPQQTQTNQPNDCSMDSCLTSCDRSQKEQDIQNGGIGLRHFNGHIFMEQKEAPNLRNPELKWCDEVKKNNTFLTPLGKNEERTSYGVESSPNKLSMTIGLERETENGISIYPPERVITESHSDGEFQHRNTTRTETIKQVDDRLPSYSAAARLLDLNTHGDSEATTSCKQLDLNRFSWN. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04671 447 Gene3D - 45 133 - -
Seca12g04671 447 Pfam MYB-CC type transfactor, LHEQLE motif 179 225 IPR025756 -
Seca12g04671 447 SUPERFAMILY Homeodomain-like 45 131 IPR009057 -
Seca12g04671 447 MobiDBLite consensus disorder prediction 149 174 - -
Seca12g04671 447 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 131 IPR006447 GO:0003677
Seca12g04671 447 Coils Coil 181 201 - -
Seca12g04671 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 322 IPR044848 GO:0003700
Seca12g04671 447 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04671 Seca-Chr12 126906821 126909163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04671 108 447 G2-like Transcription Factor Family AT3G04030 51.009 3.77e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g04671 Myb_CC_LHEQLE 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04671 - - gmx:100810396 655.981