Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04667 ATGTTCAAGTCCAATCCCAGCATCCCCTACCACCAATGGCACCATGACATCATCATGTCCTCTCCCATCTTCACAGGTTTTCAAAGAAGCCCTTACACTAATGTAAGTGATGATGAGAGAAATTCAGACTCAAAAACAAGATGGAATCCAACACCAGAGCAAATTCGTATACTGGAATCCATCTTCAACTCTGGGACGGTGAACCCTTCAAGGGATGAGACAAGGAAGATCAGGACCCAATTGCAAGCCTATGGTGAAGTGGGTGATACCAATATCTTTTACTGGTTCCAGAACCAAAAATCCAGGAGCAGGAACAAGCTCCGCCAGCTCAAGTACGTGAGGGGAAAGAAACTAAAACCACAAAAAAACTCTGTTTCTCTCCCTCAATTCACAACAGCACCTACATCCTCTTCTTCCTCTGAGAAATCCTCTCTAGAAGAAATGATAATACCCTCCATCGATATCCCAGTGGGATTCTCCCTTAATGTCAATGATTGGTTACCTAATTCCCCCACAGGGTCTGTGAACCAGACTTATTTTCAGACCCAAATTGAGACCAATTTTCAGCTACCAATAATAGATGAGCCTTTGTTTTTCCCTCTGCACTATAATGATCATGAAGTACTAGTGGCTAATAATGCCATGACAACAACACAAGGGCTTTACACCTCTGAATTCTTCAACATGATTCAACCTCAGTCTCAACAATATTTTGAACCTTATACTAGTCCATCTCTCAATGATATCATGAACTATGGAACCACCGTAGAGGAATACCAAGATCAAGACAATGTCATGGAGACAATGCACCAACAGTACTCACAGCTCAATTTTTGTCTCACTCCAACTGATGCAATACCTATTGTTCCTCCCATCACTGATACAGAATTTACTGTTCCATCCTACATCAGTGAATTTCAAGGTATTTTTGAGGAAGCCGGTGGTACGGAAGCAACATGTATTGTGTTCATTAACAACCTCGAATTTGAGGTTGCGGTAGGGCCCTTCAATGTATTTGAAGCCTTTGGGATTGGGGCCATTCTCATAGACTCCACGGGCAACCCTGTTCTCATCGACGAGTTTGGTTTCACCCTTCAGTCACTCCAACATGGCGCATCCTATTATCTCCTGTGGTGTGTACGTACTTGTACATTATAA 1158 0.4266 MFKSNPSIPYHQWHHDIIMSSPIFTGFQRSPYTNVSDDERNSDSKTRWNPTPEQIRILESIFNSGTVNPSRDETRKIRTQLQAYGEVGDTNIFYWFQNQKSRSRNKLRQLKYVRGKKLKPQKNSVSLPQFTTAPTSSSSSEKSSLEEMIIPSIDIPVGFSLNVNDWLPNSPTGSVNQTYFQTQIETNFQLPIIDEPLFFPLHYNDHEVLVANNAMTTTQGLYTSEFFNMIQPQSQQYFEPYTSPSLNDIMNYGTTVEEYQDQDNVMETMHQQYSQLNFCLTPTDAIPIVPPITDTEFTVPSYISEFQGIFEEAGGTEATCIVFINNLEFEVAVGPFNVFEAFGIGAILIDSTGNPVLIDEFGFTLQSLQHGASYYLLWCVRTCTL. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04667 385 MobiDBLite consensus disorder prediction 118 144 - -
Seca12g04667 385 CDD homeodomain 45 106 IPR001356 GO:0003677
Seca12g04667 385 FunFam WUSCHEL-related homeobox 11 45 112 - -
Seca12g04667 385 Gene3D - 45 113 - -
Seca12g04667 385 MobiDBLite consensus disorder prediction 122 144 - -
Seca12g04667 385 SUPERFAMILY Homeodomain-like 38 109 IPR009057 -
Seca12g04667 385 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 IPR044557 GO:0003700|GO:0050793
Seca12g04667 385 Pfam Homeodomain 45 104 IPR001356 GO:0003677
Seca12g04667 385 ProSiteProfiles 'Homeobox' domain profile. 41 106 IPR001356 GO:0003677
Seca12g04667 385 SMART HOX_1 43 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04667 Seca-Chr12 126765261 126766970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04667 1 377 Wox Gene Family AT5G45980 31.538 1.19e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca12g04667 Homeodomain 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04667 - - aprc:113852083 346.665