Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04661 ATGGTTTTACTCTCTCAAACTGAGTTACCCCTCAACGAGAACGATTCTCAAGACATGGTCATATACCAAGTTCTGAACGAGGCCACTGTTGTGAACAACACCCTTATACAACAGAGGCATCAAAATGGTCTAGAACCAACCAAGAACATCAGCAAGAAGCATTACACAGGCGTGAGGCGTCGACCTTGGGGGAAATTTGCAGCTGAAATTCGTGACTCAACAAGAAATGGAGCTAGGATATGGCTTGGAACATTTGAAACAGCTGAAGAGGCTGCTATAGCTTATGATAAAGCTGCTTTCAGAATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCACCTGAAATTGTTGTTGCTGCTTCTTCTATGCAATTGAATTCTAATTCTAAGCCTGATTTGAGCTCAGGGAACTTCAACAGTAAGGGTTCTGAATCAAATGCTAGCAATTCTTGCACAACTTCCATTGGGGCAGGTAATAGTGCCCAATCAGAAAGCACAAGTAGTTTTGGACGCTAG 513 0.4327 MVLLSQTELPLNENDSQDMVIYQVLNEATVVNNTLIQQRHQNGLEPTKNISKKHYTGVRRRPWGKFAAEIRDSTRNGARIWLGTFETAEEAAIAYDKAAFRMRGAKALLNFPPEIVVAASSMQLNSNSKPDLSSGNFNSKGSESNASNSCTTSIGAGNSAQSESTSSFGR. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04661 170 MobiDBLite consensus disorder prediction 127 170 - -
Seca12g04661 170 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 PANTHER DNA-BINDING DOMAIN 44 148 IPR044808 GO:0003700|GO:0009873
Seca12g04661 170 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Seca12g04661 170 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 FunFam Ethylene-responsive transcription factor 2 53 114 - -
Seca12g04661 170 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Seca12g04661 170 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04661 Seca-Chr12 126640112 126640624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04661 9 116 AP2-EREBP Transcription Factor Family AT3G23240 58.929 1.39e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca12g04661 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04661 K13433 - zju:107411165 196.052