Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04658 ATGGCTATTCATGAAGGGATTCTTGAAAATATATGGTCTAAAATCACAAGCAGTGATAGAGCACATGATGGAACAGGTGTTGCAACAGAATCTCCCAATTCATGGGAAGAACTGCATAATCCTGATGGAAGAGATGGGTCTATGGAAATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAATGTTAGATGGTTTTCTACCTGCTACAACTAAAATAGAAGATTCTATTCACACCAATGTGGAAATTGGCAATGTTACTAAATCCAATCACAAGGTAGAAGACGCTGTGAAAGCAGATAATAATAAGGGAGGTGCAACAAAACACTACAGGGGAGTGAGGAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGATACAGCTGAAGAAGCAGCTCTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTGCAAAGGCAAACCTCAATTTCCCAATTGAGACAGTTGCAAAGGCTTTAGCATTTGACCAGAAAGGAAGAACTGATTTCATTACATGTGACTCTAGAACTCTTCAGGAGGATTGTTCTGCTTGCACATATACAGGGGACAAAGAAATTAATTCTTTCAAGTCACGGAAGAGAGGATCAAGGGGAAGGGAAGAATTTGTGGATTTGGTGAATGAACAACCTGCAACCAAAAAAATAGCAAGCTTGGAAGGAGTGCTAGAAAATGAACTTGGTGTTTTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGACAATTTACTATCTTCTTTTTGA 834 0.4005 MAIHEGILENIWSKITSSDRAHDGTGVATESPNSWEELHNPDGRDGSMEILKRLPSLGRWISMGADFWEEMLDGFLPATTKIEDSIHTNVEIGNVTKSNHKVEDAVKADNNKGGATKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGAKANLNFPIETVAKALAFDQKGRTDFITCDSRTLQEDCSACTYTGDKEINSFKSRKRGSRGREEFVDLVNEQPATKKIASLEGVLENELGVFVFQDLGSDYLDNLLSSF. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04658 277 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 CDD AP2 117 177 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Seca12g04658 277 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Seca12g04658 277 MobiDBLite consensus disorder prediction 19 36 - -
Seca12g04658 277 SUPERFAMILY DNA-binding domain 118 178 IPR016177 GO:0003677
Seca12g04658 277 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Seca12g04658 277 PANTHER DNA-BINDING DOMAIN 99 222 IPR044808 GO:0003700|GO:0009873
Seca12g04658 277 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04658 Seca-Chr12 126580267 126581100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04658 7 277 AP2-EREBP Transcription Factor Family AT4G18450 35.048 1.65e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g04658 AP2 8.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04658 - - gmx:100820226 330.487