Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04648 ATGCATTTCCCATCCACTAGTCCTCTTTGGCTCTCCTATTTATTCATCTCCTTTGTTCTCATCAATGGCTACCAAGCTGAGGCTACAAATGGAGACAACAAAGTTATATCTATTGGTGCAATGATTGATGTTAACTCTCGTATTGGGAAAGAACAACAAGTAGCCATGGATATTGCAGCTCAAAGATACAACAATACTTCAAAGACCCACAAGCTGGCTCTTCATTTTCAAGAACCCACCAAGGACCCTTTCAGAGCCACTTCTCTTGCTGAAGAGATGATTAAAACGCAGAAGGTGCAAGTGATTGTAGGGATGAACACATGGGGAGAAGCAGCTTCAGTAGCTGAATTAGTACACCAAACTCAAGTTCCTATCATATCCTTTGTAGCACCAACCATTACCCCACCATTGATGCAAATTCGGTGGCCTTATTTGGTAAAGATGGCTAACAATGGTACTGCATATGTAAAATGCATTGCAGATATGGTGCATGCTTATGGTTGGCAAAAAGTAGTAGCCATCTATGAAGATGATACCTATGGTGGAGATTTTGGGATGCTAGCACTGCTATCTGAGGCCCTCCAAGATGTTGGTTCAATGATTGAATACCGTTTAGCTCTGCCATCACATTCTTATTTGCCTAATCCTGGAGAGTTTATTCAAGAAGAGCTGTCTAAGTTAACAAAAAATACACCATCTAGAGTGTTCATTGTTCTTCAATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAAAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGTTGGACTCTGTCAATAAGTCTGGTACTTCCTATATGCAAGGAGCTTTAGGAATCAAGACATACTTCTCTGAAAATAGCAGTGAGTATCAACATTTTGAGGCTCAGTTCCGGAGAACTTTTCGGTACAAGCATCCTGAGGAAGGTGATAGCAACCCTGGATTTTATGCTCTACAAGCATATGATAGCATTAGAATTGTTGCACAAGCAGTGGACAGAATGGCTAGTGGCAATGGTAGTGGCAGAGAGACTTTATTAAGAGAAATATTGTCTAGCAATTTCCTTGGTTTAAGTGGAAAAATTCAATTTGAATCACTTCAGCTCTTGCAGAATCCTATCTTGAGGATTGTAAATGTAAATGGGAAGAGTTACAGAGAATTAGACTATTGGACTCTAGAAAGTGGGTTCATTCCCACAGAACAAGGTGGAAATAGTACTTTTAGGAACACAGAAAGTTTGAGTGGTGTAGTGATTTGGCCTGGGAAAACAACTAGAGTTCCAAAGGGCTGGAATATGCCTACTAAACAAAATCCAATGAAAATTGCAGTTCCTGGAAGAACAGCATTTTCTAAGTTTGTCAAGGTTGATTATGACGAGCATGAAAGGCGATATAAGTATTCCGGATTTTGCATTGAAATTTTTGAGAAGGTGTTAGGACTTTTGGAGTATGATCTGCCATATGAATATTATCCCATCAATGGAACCTATCCTGATCTGGTTCAACTTGTGTATAACAAGACTTATGATGCTGTTGTTGGCGACATGACCATACTGGCAGAGAGATTGCAATATGTAGATTTTTCTGTGCCATATACAGAATCAGGATTGTCAATGGTAGTTACAGAAAGGTCCCAAGAATCTGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCAGTAACTGGTGCCATCTTGATTTACACAATGTTAGTAGTGTGGTACTTGGAGCGGGATTCCAATCCAGAGTTTGAAGGCAATTGGAAAGTGCAGATCAGCACTGCTCTTTGGTTTACTTTCTCCTCTCTATTCTTTGCTCATAGGGAGAAAATGTATAGCAACTTATCTCGTGTTGTCATGGTATCATGGCTCTTTCTAGTTTTGATTCTAAACTCAAGCTACACTGCGAGTCTTTCTTCAATGCTCACAGTTCAACAACTGAAACCAAATGTTACAGACATTGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGAAAGTCGAAACATTCAAACCAGAGAACATCGTAAACATTAATAGTGAATTCAGTTATGTCAGTGCATTCAAAACCGATTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAAAAAGCATACATCAGCAAATACTGCAAAGGGTACTCTGGCTCTACACCTACCACCAAATTTGGAGGACTGGGATTTATGTTCCAGAAAGGCTCCCCCCTGGCCAAAGATGTTTCGAAAGCTATTTTGCGACTCTTAGAGGTGGGAGAACTGCAGAGGTTAGAAGAGAAATGGTTGAAGCCCTCAGGGGAGTGCTACAACAATATGACCTCCGAGAGTACAGAAAGTTTGAAGCTTGGAAGCTTCTGGATTCTCTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTCTACCATCCATTCGCTAAAATCAAGCCTAACATCCCAAGATGAGGCACAAGAAGGTAATGGATGCCCAAATGATAAGAGCCCGTGGAAAAGGGTGGTTAAGTTAACTAGAAAGATTTGTAGCAGAAAGCATAATAAAGCGACTACGGCACAGAAAGATGTTGTTACTGACTGTTCTTCCAGATGGGATTGTATCAGTATCACTGACAACCCTGAGTATCAGCAGGCAATGGCTCTTCAATTACCAGAAATCATAACTGTCTCTTCCCCACCAACACAGTTGTAA 2766 0.4038 MHFPSTSPLWLSYLFISFVLINGYQAEATNGDNKVISIGAMIDVNSRIGKEQQVAMDIAAQRYNNTSKTHKLALHFQEPTKDPFRATSLAEEMIKTQKVQVIVGMNTWGEAASVAELVHQTQVPIISFVAPTITPPLMQIRWPYLVKMANNGTAYVKCIADMVHAYGWQKVVAIYEDDTYGGDFGMLALLSEALQDVGSMIEYRLALPSHSYLPNPGEFIQEELSKLTKNTPSRVFIVLQSSLDMVIHLFREASQMGLVDKESAWIIPESITNLLDSVNKSGTSYMQGALGIKTYFSENSSEYQHFEAQFRRTFRYKHPEEGDSNPGFYALQAYDSIRIVAQAVDRMASGNGSGRETLLREILSSNFLGLSGKIQFESLQLLQNPILRIVNVNGKSYRELDYWTLESGFIPTEQGGNSTFRNTESLSGVVIWPGKTTRVPKGWNMPTKQNPMKIAVPGRTAFSKFVKVDYDEHERRYKYSGFCIEIFEKVLGLLEYDLPYEYYPINGTYPDLVQLVYNKTYDAVVGDMTILAERLQYVDFSVPYTESGLSMVVTERSQESAWMFMKPFTWQMWAVTGAILIYTMLVVWYLERDSNPEFEGNWKVQISTALWFTFSSLFFAHREKMYSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLKPNVTDIEWLKKNNMKIGCDGDSFVRTYLEKVETFKPENIVNINSEFSYVSAFKTDSIAAAFLELPYEKAYISKYCKGYSGSTPTTKFGGLGFMFQKGSPLAKDVSKAILRLLEVGELQRLEEKWLKPSGECYNNMTSESTESLKLGSFWILYVISGATSTICFLLSTIHSLKSSLTSQDEAQEGNGCPNDKSPWKRVVKLTRKICSRKHNKATTAQKDVVTDCSSRWDCISITDNPEYQQAMALQLPEIITVSSPPTQL. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04648 921 FunFam Glutamate receptor 155 324 - -
Seca12g04648 921 CDD GluR_Plant 450 787 - -
Seca12g04648 921 Gene3D - 159 324 - -
Seca12g04648 921 FunFam Glutamate receptor 561 691 - -
Seca12g04648 921 Pfam Ligand-gated ion channel 789 818 IPR001320 GO:0015276|GO:0016020
Seca12g04648 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 835 IPR015683 -
Seca12g04648 921 SUPERFAMILY Periplasmic binding protein-like I 33 443 IPR028082 -
Seca12g04648 921 SUPERFAMILY Periplasmic binding protein-like II 428 788 - -
Seca12g04648 921 FunFam Glutamate receptor 451 562 - -
Seca12g04648 921 CDD PBP1_GABAb_receptor_plant 37 409 IPR044440 -
Seca12g04648 921 Gene3D - 561 698 - -
Seca12g04648 921 Gene3D - 31 158 - -
Seca12g04648 921 SMART GluR_14 453 789 IPR001320 GO:0015276|GO:0016020
Seca12g04648 921 Pfam Receptor family ligand binding region 53 394 IPR001828 -
Seca12g04648 921 PIRSF IGluLR_plant 6 907 IPR017103 -
Seca12g04648 921 Pfam Bacterial extracellular solute-binding proteins, family 3 478 788 IPR001638 -
Seca12g04648 921 Gene3D - 342 455 - -
Seca12g04648 921 Gene3D - 733 794 - -
Seca12g04648 921 Gene3D - 460 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04648 Seca-Chr12 126467942 126472079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04648 13 827 Ion Channels AT2G29120 34.313 2.53e-147 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04648 - - gmx:100780320 1337.01