Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04647 ATGTTATGTCACGTAAGCAAGTTGTTGGGTTGGGAAGTTAATTGCCACACAACTTTCTGTGCCTACTACAGTGATTTAGAAGGAGGACTTTTGTTGGACTCACTTTCATTAGTTATTGTGTGTGGCACACTTTTGCAAGAGATGTCTCCCCTTTCCACTATCAAGTTCAAAGTTTCAAATGTTTGGCACTTCATTCCTGCACTCATATTATTGTTTTCCTTCATTTCATTTGGAGCTGAGGCCATTAGCATTGTGAAATCTGTTTCCATTGGTGTAATCATTGACCTTAACTCTCGTGTTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACGGTTCAAAGTACCACAAGCTGTCTCTACATTTCAATGACTCTGGAGAGGTGGCCCTAAAAGCAATTTCTATTGCTGAAGAGATGATAAAAATAAAGAAAGTGGAAGTGATAATTGGTATGCACTCATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTATTCATTTCGTTGGCCTTTCTTAATGCTAATGGCTCATAATAGTACTGCATATGTAAAATGCATTTCTGATATAGTTCATGCATACAATTGGCAAAGAGTTATAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTTGCACTTCTATCTGAGGCACTCCAAAATGTTGGTTCACAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTCTGTCTCATCCAAGTGGCGTAGTTCAAGTAGAGTTGCTGAAGCTGCTTAACACTCAATCTCGTGTCTTCATAGTTCTACAATCATCACTACCTATGGTAACTTGTTTGTTTGCAGAAGCTAAAAAGATGGAACTCTTGGATAGGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTCACATGCTTGACTCTGTTAGTGACTCTGTCATTTCCTCCATGGAAGGTGTTTTGGGAATCAAGAGTTATTATTTACAAAATAGTACTGATTATCTAAGTTTCCAAGTCCAGTTCAGGAAAGCTTTTCAAAAGGAAAATCCAGAAGAAGAAAACTCCCGACCTGGATTTTATGCACTTCAAGCATATGATAGCATTAGAGTTGTTACAAGTGCCATGGAGACATTAAGAAATCATAACAGTAGTCCTAAGATATTTCTAAAAGAAATGGTGTCTTCCAATTTCCTTGGTTTAAGTGGAGAAATAAAATTTGAACATCAGCAGACCTTGCCCTCTCCTATATTTAGGATTGTAAATGTGATTGGAAAGAGTTACAAAGAAATTGACTTTTGGACAGAAGAGTATGGATTCTCCAAAACCCTTTCCTTTGAATTAGCTGGCCAGCCAGTTAAAAATAATGAGGTCACTGGTATAATAGAAGGTTTGGCAGGTCCCATAATTTGGCCTGGGAATTTAATGAGGACTCCAAAGGGTTGGAGAATGCCTACAAGAGCAAAACCATTGAAAATTGGTGTTCCAAGAAGGACTCCGTTTGAGAAGTTTGTGAAGGTTGAGTACAATGAAAACTCAAATCAAACCAAGTACAGTGGATTCTGCATTGAAATATTTGAAAAGATTCTAGATCTATTGCAGTATGATCTACCATATGAAATAGTTCCTTTTAATGGAACCTATACTGAACTAGTCTTTCTTGTCTATAACAAGACTTTTGATGCTGTTGTTGGTGACATAACCATTGTGGCTGATAGAATGCAATATGTGGATTTTACACTGCCATATACAGAGTCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAGGATACAGCTCTGATTTTTATGAAGCCCTTTACCTGGGAAATGTGGATGGTCATAGTTTCCATCCTCATCTACACCATGTTTGCAGTTTGGTACTTGGAGCGGGATTCCAATCCAGAATTCAGTGGTCCATGGAAGAATCAAATTAGCTTTGCTCTATGGTTTACCATATTTTCTCTTTTATTTTCCCACAGGGAGAAAATCTATAGCAACTTCACTCGAATGGTGATTGTTGTGTGGCTCATTCTTGGTTTGATCCTAACCTCAAGCTACACAGCTAATCTATCCTCAATGCTCACAGTTCAACAATTGCAACCAAATGTTAAAAACATTGAATCACTTAAAGGAAGCAATTCCAAAATCGGTTTCTCAGGTGATCCATTTGTTAGAAAATATCTAGAAAATGTACTTCATTTCAAATCAGAGAATATTGTCAAAGTTAGCAGGAACTACAATTACACTGAGGAGTTCAAAATCAAGCACATAGCAGCTGCTTTTATTGAAATCCCCTATGAAAAGGTATTCATCAGCAAGAACTGCCGGGGATACTCTGCCTTCACTCCTACCAACAGATTTGGAGGGCTAGGCTTTATGTTCCAGAAAGGTTCTCCAATTACCAGAGACTTTTCCGAAGCTATATTGCAGCTCTCAGAGAATGGAGACATGAAGTCACTAGAAGATAAATGGTTGAACAACCCAGATGAGTGTTCAACCAATATAACTACCAATGCCAACGGAAGTTTGAAGCTTCAAAGCTTCTGGGTTCTTTTTGCAGCATCTGTTTTCACTTCTACTTTGTGTGTGACAATATCCAAGGTACTGTCAATGAAAAGTACTCAGCAGCATCAAGAGGCATTTGAAGGCCATCATGCTTGTTCAGCTATTGAGACTGTGTGGAAGAAGGTGCTCACTCTAGGGAACTATATATACTATTCTGAAAACACTAATCAAAGGCAAACCCCAAATGCAGCTCATATAGAGGATGTAGAAGAATTTTGTTTGGAGCTTGAACAAGGAAGCACACCTGATACTGTAGCTGGAAATCAGGCTTTGCCACCACCAGAAAACTCTTCGTCGCCGTAA 2928 0.3876 MLCHVSKLLGWEVNCHTTFCAYYSDLEGGLLLDSLSLVIVCGTLLQEMSPLSTIKFKVSNVWHFIPALILLFSFISFGAEAISIVKSVSIGVIIDLNSRVGKEEKVAIELAAQNYNNGSKYHKLSLHFNDSGEVALKAISIAEEMIKIKKVEVIIGMHSWQEAILVAEVGSQAQVPVISFASPITTPSLYSFRWPFLMLMAHNSTAYVKCISDIVHAYNWQRVIVIYEEDAYGSDYGMFALLSEALQNVGSQIELSLALPPYSSLSHPSGVVQVELLKLLNTQSRVFIVLQSSLPMVTCLFAEAKKMELLDRETAWIVPESITHMLDSVSDSVISSMEGVLGIKSYYLQNSTDYLSFQVQFRKAFQKENPEEENSRPGFYALQAYDSIRVVTSAMETLRNHNSSPKIFLKEMVSSNFLGLSGEIKFEHQQTLPSPIFRIVNVIGKSYKEIDFWTEEYGFSKTLSFELAGQPVKNNEVTGIIEGLAGPIIWPGNLMRTPKGWRMPTRAKPLKIGVPRRTPFEKFVKVEYNENSNQTKYSGFCIEIFEKILDLLQYDLPYEIVPFNGTYTELVFLVYNKTFDAVVGDITIVADRMQYVDFTLPYTESGLSMIVPAKSEDTALIFMKPFTWEMWMVIVSILIYTMFAVWYLERDSNPEFSGPWKNQISFALWFTIFSLLFSHREKIYSNFTRMVIVVWLILGLILTSSYTANLSSMLTVQQLQPNVKNIESLKGSNSKIGFSGDPFVRKYLENVLHFKSENIVKVSRNYNYTEEFKIKHIAAAFIEIPYEKVFISKNCRGYSAFTPTNRFGGLGFMFQKGSPITRDFSEAILQLSENGDMKSLEDKWLNNPDECSTNITTNANGSLKLQSFWVLFAASVFTSTLCVTISKVLSMKSTQQHQEAFEGHHACSAIETVWKKVLTLGNYIYYSENTNQRQTPNAAHIEDVEEFCLELEQGSTPDTVAGNQALPPPENSSSP. 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04647 975 SUPERFAMILY Periplasmic binding protein-like II 486 847 - -
Seca12g04647 975 Gene3D - 90 434 - -
Seca12g04647 975 Pfam Bacterial extracellular solute-binding proteins, family 3 534 846 IPR001638 -
Seca12g04647 975 FunFam Glutamate receptor 207 375 - -
Seca12g04647 975 Gene3D - 619 754 - -
Seca12g04647 975 SUPERFAMILY Periplasmic binding protein-like I 87 501 IPR028082 -
Seca12g04647 975 Gene3D - 755 853 - -
Seca12g04647 975 Gene3D - 203 455 - -
Seca12g04647 975 CDD PBP1_GABAb_receptor_plant 89 463 IPR044440 -
Seca12g04647 975 FunFam Glutamate receptor 509 620 - -
Seca12g04647 975 PIRSF IGluLR_plant 59 953 IPR017103 -
Seca12g04647 975 FunFam Glutamate receptor 619 757 - -
Seca12g04647 975 Gene3D - 507 618 - -
Seca12g04647 975 MobiDBLite consensus disorder prediction 956 975 - -
Seca12g04647 975 SMART GluR_14 511 847 IPR001320 GO:0015276|GO:0016020
Seca12g04647 975 CDD GluR_Plant 508 845 - -
Seca12g04647 975 Pfam Ligand-gated ion channel 847 875 IPR001320 GO:0015276|GO:0016020
Seca12g04647 975 Pfam Receptor family ligand binding region 106 443 IPR001828 -
Seca12g04647 975 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 88 893 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04647 Seca-Chr12 126437084 126441337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04647 88 885 Ion Channels AT2G29120 32.656 2.34e-141 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04647 - - cill:122296491 983.4