Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04646 ATGTCTCCCCTTTCCACTACCAAGTTCAAAGTTTCAAATGTTTGGCACTTCATTCCTGCACTCATATTATTGTTTTCCTTCATTTCATTTGGAGCTGAGGCCACTAGCATTGTGAAATCTGTTTCCATTGGTGTAATCATTGACCTTAACTCTCGTGTTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACGGTTCAAAGTACCACAAGCTGTCTCTACATTTCAATGATTCTGGAGGGGTAGCCCTAAGAGCAATTTCTATTGCTGAAGAGATGATTAAAATAAAGAAAGTGGAAGTGATAATTGGTATGCACTCATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTTTTCACTTCGTTGGCCTTTCTTAATGCTAATGACTCATAATAGTACTGCATATGTAAAATGCATTTCTGATATAGTTCATGCATACAATTGGCAAAGAGTTATAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTAGCACTTTTATCTGAGGCACTCCAAAATGTTGGTTCACAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTTCTTCTTTGTCTCATCCAAGTGAGGTAGTTCAAAAAGAGTTGCTGAAGCTGCTTAACACTCAATCTCGTGTCTTCATAGTTCTACAATCATCACTACCTATGGTAACTTGTTTGTTTGAAGAAGCTAAAAAGATGAAACTCTTGGATAGGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTTATATGCTAGACTCTGTTAGTGACTCTGTCATTTCCTCCATGGAAGGTGTTTTAGGAATCAAGACTAACTACTCACAGAACACTACTGATTTTCAAAGTTTCCAAGTCCAGTTCAGGAAAGCTTTTCAAAAGGAAAATCCAGAAGAAGAAAACCACCGACCTGGATTTTATGCATTGCAAGCATATGATAGCATTAGAGTTGTTACAATTGCTATGGAGACATTAAGCAACCATAACAGTAGTCCTAAGATATTTCGAAAAGAAATGATGTCTTCCAATTTCCTTGGTTTAAGTGGAGAAATAAAATTTGAACATCAGCAGACCTTGCCCTCTCCTATATTTAGGATTGTAAATGTGATTGGAAAGAGTTACAAAGAAATAGACTTTTGGAAAGAAGAGTATGGATTCTCCAAAACCCTTCACTTTGAATTAGCTGGTCAGGCAGTAAAAAATAATGAGGTCACCGGTACAACAGAAGGTTTGGCAGGTCCAATAATTTGGCCTGGGAATTTAATGAGCACTCCAAAGGGTTGGAGAATGCCTACAAGATCAAAACCATTGAAAATTGGTGTTCCAAGTAGGACTCCGTTTGAAAAGTTTGTGAAGGTTGAGCATGATGAAAACTCAAATCAAACCAAGTATAGTGGATTCTGCATTGAAATTTTCGAAAAGATTCTACATCTATTGCAGTATGATCTACCATATGAAATAGTTCCTTTTAAAGGAAACTACACTGCACTGGTCTATCTTGTCTATAACAAGACTTTTGATGCTGTTGTTGGTGACATAACCATTGTGGCTGATAGAATGCAATATGTGGATTTCACACTGCCATATACAGAGTCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAGGATACAGCTCTGATTTTTATGAAGCCCTTTACTTGGGAAATGTGGATGGTTACAGTTTCCATCCTCATTTACACCATGTTGGCAGTTTGGTACTTGGAGAGGGATTCCAATCCAGAATTCAATGGTCCATGGAAGAATCAGATTAGCATTGCTCTATGGTTTACTGTCTCTTCTCTATTATTTGCCCACACGGAGAGGATCCAGAGCAACTTCACTCGAATGGTGATTGTTGTGTGGCTCATTCTTGGTTTGATCCTAACCTCAAGCTACACTGCTAATCTATCCTCAATGCTCACAGTTCAACAATTGCAACCAAATGTTAAAAACATTGACTCACTTAAAGGGAGCAATTCCAAAATCGGTTTCTCAGGTGATCCATTTGTCAGAAAATATCTAGAAAATGTGCTTCATTTCAAATCAGAGAATATTGTCAAAGTTAACTTCAACTACACTGAGGAGTTCAAAATCAAGCTCATAGCAGCTGCTTTTACTGAAATCCCCTATGAAAGGGTATTCATCAGCAAGAACTGTCGGGGATACTCTGCTTTCAGACCTACCAACAGATTTGGAGGACTAGGCTTTATATTCCAGAAAGGCTCTCCAATTACCAGAGACTTTTCCAAAGCTATATTGCAGCTCTCAGAGAATGGGGACATGAAATCACTAGAAGATAAATGGTTGGACAAAGCAGATGAGTGTTCAACCAATATAACCACCAATGCCAACGGAAGTTTGAAGCTTCAAAGCTTCTGGGTTCTCTTTGCAGCTTCTGTTTTCACTTCTACCTTTTGTGTGACAATATCCAAGGCACTGTCATTTGAAGGCAATCATGCTTGTTCAGCTATTGAGACTGTTTGGAAGAAGGTGCTCACTCTAGGGAACTCCATATACTATTCTGAAAACACTAATCAAATGCAAGCCCTAAATGCAGCTGATATAGAGGATGTAGAAGAATTTTCTTTGGAGCTTGAACTAGCTGAAAATCAGGCTTTGCCAACACCAGAGAACTCTGCCTCGACATAA 2736 0.3878 MSPLSTTKFKVSNVWHFIPALILLFSFISFGAEATSIVKSVSIGVIIDLNSRVGKEEKVAIELAAQNYNNGSKYHKLSLHFNDSGGVALRAISIAEEMIKIKKVEVIIGMHSWQEAILVAEVGSQAQVPVISFASPITTPSLFSLRWPFLMLMTHNSTAYVKCISDIVHAYNWQRVIVIYEEDAYGSDYGMLALLSEALQNVGSQIELSLALPPYSSSSLSHPSEVVQKELLKLLNTQSRVFIVLQSSLPMVTCLFEEAKKMKLLDRETAWIVPESITYMLDSVSDSVISSMEGVLGIKTNYSQNTTDFQSFQVQFRKAFQKENPEEENHRPGFYALQAYDSIRVVTIAMETLSNHNSSPKIFRKEMMSSNFLGLSGEIKFEHQQTLPSPIFRIVNVIGKSYKEIDFWKEEYGFSKTLHFELAGQAVKNNEVTGTTEGLAGPIIWPGNLMSTPKGWRMPTRSKPLKIGVPSRTPFEKFVKVEHDENSNQTKYSGFCIEIFEKILHLLQYDLPYEIVPFKGNYTALVYLVYNKTFDAVVGDITIVADRMQYVDFTLPYTESGLSMIVPAKSEDTALIFMKPFTWEMWMVTVSILIYTMLAVWYLERDSNPEFNGPWKNQISIALWFTVSSLLFAHTERIQSNFTRMVIVVWLILGLILTSSYTANLSSMLTVQQLQPNVKNIDSLKGSNSKIGFSGDPFVRKYLENVLHFKSENIVKVNFNYTEEFKIKLIAAAFTEIPYERVFISKNCRGYSAFRPTNRFGGLGFIFQKGSPITRDFSKAILQLSENGDMKSLEDKWLDKADECSTNITTNANGSLKLQSFWVLFAASVFTSTFCVTISKALSFEGNHACSAIETVWKKVLTLGNSIYYSENTNQMQALNAADIEDVEEFSLELELAENQALPTPENSAST. 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04646 911 Gene3D - 156 410 - -
Seca12g04646 911 FunFam Glutamate receptor 574 712 - -
Seca12g04646 911 Pfam Receptor family ligand binding region 59 398 IPR001828 -
Seca12g04646 911 PIRSF IGluLR_plant 12 891 IPR017103 -
Seca12g04646 911 CDD GluR_Plant 463 798 - -
Seca12g04646 911 Gene3D - 43 389 - -
Seca12g04646 911 Gene3D - 745 805 - -
Seca12g04646 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 844 IPR015683 -
Seca12g04646 911 FunFam Glutamate receptor 464 575 - -
Seca12g04646 911 FunFam Glutamate receptor 160 330 - -
Seca12g04646 911 SMART GluR_14 466 800 IPR001320 GO:0015276|GO:0016020
Seca12g04646 911 Gene3D - 462 573 - -
Seca12g04646 911 Pfam Ligand-gated ion channel 800 828 IPR001320 GO:0015276|GO:0016020
Seca12g04646 911 Pfam Bacterial extracellular solute-binding proteins, family 3 489 799 IPR001638 -
Seca12g04646 911 SUPERFAMILY Periplasmic binding protein-like II 441 799 - -
Seca12g04646 911 SUPERFAMILY Periplasmic binding protein-like I 40 456 IPR028082 -
Seca12g04646 911 CDD PBP1_GABAb_receptor_plant 42 418 IPR044440 -
Seca12g04646 911 Gene3D - 574 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04646 Seca-Chr12 126414517 126418185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04646 16 860 Ion Channels AT2G29100 33.145 1.08e-143 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04646 - - gmx:100818619 937.176