Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04645 ATGGGATTTGAAGACGAAGATCATGATGAGCGTGTCACTCATGGAACAGCCCTTACGGTCACTCTCGCTGCAACTCTGTTTTTAGTTGGTATCTTATTGCTCACTACCTTCCTCTGTTTCTATGCAAAACATCTCCTAAGACGCCAACAGAGAAGACGCCAAAACGAATTTCTCTACCGTATAAGACCTCAAATTGCACCCACAAATGTAGAGTCACCAAATTCTGGGCTTGACCCTGTCATCATAGCCTCACTCCCTAGAATTTTGTACAAGCAAACGGATCAGTTCAGGCAAGGTGAAGTGATGGAGTGCTCTGTTTGTTTAACAACTATTGAAGAAGATGCAATGATTAGGGTGCTTCCGAATTGTAAGCACGTGTTCCATGTTGATTGTGTTGATATGTGGTTCAGTTCTAATAGCACTTGCCCTGTTTGTCGTGCCGTGGTTGAACTTGAACCCATGGTTTTGGACACACAGGTCCAAGTCCAACCCACTGCGCCAATATTGGTTGAGGATGATGGTGTGTCGTCGCAGGATGCAAATCATGAAGTGGAAATGGTGGGTTGTTCTGGCTTGAGAATTGCTTCTTTTCCTAGGATGGTTATTAGCAGGGAAAGATCAAGAAAAGATCAGAGCTTTGATGAGTCTGTTTCAGTAGATGTAGAGAAGCGGTAA 675 0.44 MGFEDEDHDERVTHGTALTVTLAATLFLVGILLLTTFLCFYAKHLLRRQQRRRQNEFLYRIRPQIAPTNVESPNSGLDPVIIASLPRILYKQTDQFRQGEVMECSVCLTTIEEDAMIRVLPNCKHVFHVDCVDMWFSSNSTCPVCRAVVELEPMVLDTQVQVQPTAPILVEDDGVSSQDANHEVEMVGCSGLRIASFPRMVISRERSRKDQSFDESVSVDVEKR. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04645 224 SUPERFAMILY RING/U-box 84 152 - -
Seca12g04645 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 167 - -
Seca12g04645 224 SMART ring_2 104 145 IPR001841 -
Seca12g04645 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Seca12g04645 224 CDD RING-H2_EL5-like 103 146 - -
Seca12g04645 224 Pfam Ring finger domain 103 146 IPR001841 -
Seca12g04645 224 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Seca12g04645 224 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04645 Seca-Chr12 126395544 126396218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04645 20 207 C3H Transcription Factor Family AT2G42360 39.086 1.45e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04645 K19038 - gmx:100779105 231.491