Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04621 ATGGACTTCCCGAAGAAGCGCAAAACGGAAGAGAACGGCGACGCCAATTCTCCCCCGCCATCCACCGATGCTGACACCGCCTCAATCACCACCACCACCCTCACACCAGAAGACATCCGCAGGATCCTCCAACCCTTCACCCAGGACCAGCTCCTCGAACTTCTCCAGTCAGCGTCCCTCCGCCACCCTGACGTTCTCGACGCCGTCCGCTCCGTCGCCGACCGCGACTCCACCCTCCGTAAACTCTTTGTCCGCGGCCTCGCCGCCGAGACCACCACTGACACGCTCCGCGGCGTCTTCTCTGCTTACGGCGACCTGGATGAGGCCATCGTCATCTTCGACAAGTCCACCGGCAGGTCCAAGGGCTACGGCTTCGTCGTGTTCAAGCACGTCGACGGTGCCATCCTCGCCCTCAAGGAGCCAAGCAAGAAAATCGACGGTCGGATGACGGTGACGCAGCTGGCGGCAGCGGGAGCCGGCGGTGGCGGAGGCGGAGGCGACGTCTCGGCTCGGAAGGTTTTCGTCGGGAACGTTCCGTTCGAAATATCATCGGAGAGGCTATTGAGTGAGTTCCTTAAGTACGGTGAAATCGAAGAGGGTCCTCTAGGGTTTGACAAAGGAAGTGGAAAAACGAGAGGCTTCGCGTTCTTTGTGTACAAGACTGAAGAGGGTGCGAGGGCTTCGTTGTTGGAGCCTCTCAAGACCATTGAGGGCCACCAAGTCATTTGCAAGTTGGCTGTGGATAGCAAGAAGCCCAAGCCCGGGAGCCAAAACCCTTCGGGCTTTCCAGTTGAACCTCCTTCTTCTTTACATGCTCCTAGTCCTATGATGATGCCGCAGTACGGTGCTGCTAATACTTATGCGCCGCCGTATAGTAACCCGGTTCCATCTGGTGGTGGCTATGGGCCTGGAATTGGCGGTGGTGCTGCACAGTACGGTGGGCCTGCGCCTGCGCCGGCTTCCGGTGCAAGGTTGCCTCCAATTTCTGGTGGGGGATATCCAGATGGCTCGCATTATGGTTTCCCGTCGCAGCCCATGCCAATGCCCAGACCTCCGCCACCTGGTGGAATGTACCAAGGCGTGCCGCCTTATTATTGA 1098 0.5883 MDFPKKRKTEENGDANSPPPSTDADTASITTTTLTPEDIRRILQPFTQDQLLELLQSASLRHPDVLDAVRSVADRDSTLRKLFVRGLAAETTTDTLRGVFSAYGDLDEAIVIFDKSTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGAGGGGGGGDVSARKVFVGNVPFEISSERLLSEFLKYGEIEEGPLGFDKGSGKTRGFAFFVYKTEEGARASLLEPLKTIEGHQVICKLAVDSKKPKPGSQNPSGFPVEPPSSLHAPSPMMMPQYGAANTYAPPYSNPVPSGGGYGPGIGGGAAQYGGPAPAPASGARLPPISGGGYPDGSHYGFPSQPMPMPRPPPPGGMYQGVPPYY. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04621 365 FunFam UBP1-associated protein 2C isoform A 63 166 - -
Seca12g04621 365 MobiDBLite consensus disorder prediction 249 275 - -
Seca12g04621 365 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g04621 365 Gene3D - 169 263 IPR012677 -
Seca12g04621 365 MobiDBLite consensus disorder prediction 344 365 - -
Seca12g04621 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Seca12g04621 365 SUPERFAMILY RNA-binding domain, RBD 168 261 IPR035979 GO:0003676
Seca12g04621 365 PANTHER GEO13361P1-RELATED 59 309 - -
Seca12g04621 365 SMART rrm1_1 81 153 IPR000504 GO:0003723
Seca12g04621 365 SMART rrm1_1 172 244 IPR000504 GO:0003723
Seca12g04621 365 MobiDBLite consensus disorder prediction 314 365 - -
Seca12g04621 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 229 IPR000504 GO:0003723
Seca12g04621 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 148 IPR000504 GO:0003723
Seca12g04621 365 SUPERFAMILY RNA-binding domain, RBD 73 159 IPR035979 GO:0003676
Seca12g04621 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 252 IPR000504 GO:0003723
Seca12g04621 365 Gene3D - 31 168 IPR012677 -
Seca12g04621 365 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04621 Seca-Chr12 125812261 125816425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04621 167 264 C2H2 Transcription Factor Family AT2G19380 37.374 1.78e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04621 K12741 - gmx:100804230 445.277