Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04620 ATGGAGAATCATAACATTAATAAGGAGGAGCCAGTGATCCTGTTGCAGAGCTGTGTGAAAAGGCTTCACTTTGGGAGCTGGGAAGAGAAAGAGGTTGCAGCAAAGGAGATTGACATGTTAGCTAAAGAAGATGTCAAGGCCAGAAAGTTGATGACTGAACTTGGGGTGGTGCCTGTGCTGGTATCTATGGCAGCATCAGATGTGGCTAGCCGGCGGCTAGTAGGAGTTAAGGCATTGAACCAGCTAGCTAATGGAACATTCATGAACAAGGCTTTGATATTGGAGGCAGGAATATTATCCAAGCTGCCTAAAAGAATTGACCTTGAAGATGAATCAACTATAAGTGAATTTGCAGACTTGTTTTCTTCATTGTCATCTCTAGCAAGTTCTGAATTCCCTCATGCTTCATTACACTTTCTCCCATTTCTTATAGACATTCTTAAATCATGCTCAAGATTTGATATCAAAAGATCATGTTTGGGGGCCCTGTACAACGTCTCCACTGTGTTAGAGAATGCAGGGCCTTTGGTTTCTAATGGGGTTGTGCCTATCCTCTTAGAACTGTCCTTGATGAAAGAAATTTCAGAGAAAGCACTTTCCACTCTTGGCAACTTGGTAGTGACTAATATGGGAAAGAAAGCAATAGAGAATTGCTCAATCGTGCCAGAATGCTTGATTGAGATCTTATCTTGGGAAGATAGACCCAAATGCCAAGAATTGTCAGTTTATATTTTAATGATTCTAGCTCATCAAAGCTCATCACAAAGAGATAAAATAGCACAGTCAGAGATTATCCCTTTACTTCTTGAAGTGGCTCTATTAGGGAGCCCTTTAGCTCAGAAGAGAGCATTGAAATTGTTGCAATGGTTTAAGGATAAAAGGCAAATAAAGATGGGGTCATATTCTGGCCCACAAACTCCAAGAACTGCAATGGGTTCACCTGTAAATCATAGAGAGACAAAAGAAGGGAAGAGAATGATGAAGAATTTGGTGAAAGAAAGTTTGCATAGGAATATGGAAAAAATAACTCAAAGGGCAAATGCAGCTGTGGATTCTTCTAAGCTGAAGTCCTTATTTGTCAGCACAAGTTCCAAGAGTTTGCCTCATTAG 1110 0.4045 MENHNINKEEPVILLQSCVKRLHFGSWEEKEVAAKEIDMLAKEDVKARKLMTELGVVPVLVSMAASDVASRRLVGVKALNQLANGTFMNKALILEAGILSKLPKRIDLEDESTISEFADLFSSLSSLASSEFPHASLHFLPFLIDILKSCSRFDIKRSCLGALYNVSTVLENAGPLVSNGVVPILLELSLMKEISEKALSTLGNLVVTNMGKKAIENCSIVPECLIEILSWEDRPKCQELSVYILMILAHQSSSQRDKIAQSEIIPLLLEVALLGSPLAQKRALKLLQWFKDKRQIKMGSYSGPQTPRTAMGSPVNHRETKEGKRMMKNLVKESLHRNMEKITQRANAAVDSSKLKSLFVSTSSKSLPH. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04620 369 SUPERFAMILY ARM repeat 14 290 IPR016024 -
Seca12g04620 369 SMART arm_5 44 84 IPR000225 GO:0005515
Seca12g04620 369 SMART arm_5 169 207 IPR000225 GO:0005515
Seca12g04620 369 SMART arm_5 86 126 IPR000225 GO:0005515
Seca12g04620 369 SMART arm_5 129 168 IPR000225 GO:0005515
Seca12g04620 369 Gene3D - 4 356 IPR011989 -
Seca12g04620 369 MobiDBLite consensus disorder prediction 300 321 - -
Seca12g04620 369 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04620 Seca-Chr12 125808413 125810166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04620 28 295 U-box Gene Family AT1G67530 30.909 3.76e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04620 - - gmx:100813828 516.538