Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04618 ATGGTTTACTCCTTTTGTGATAAAAGCTCTTTATCTGGCTATGATGGTTTCAATACCACTTTGCATAACCTTGGAACTTCCAATGGTGTTTTGAGAGGTGGGTTGTCATCATCTCATTCATTGGTTTTTGAGAGTGAAAAGGGAGAGTTGGTGAAGTGCCCTTCAACTGCAAAGGTAGGAAAGAATGAGATCTCTGAGGCCAAAGCTTTAGCTGCTTTGAAGAGCCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTACGTGGTCTTGTGCCCTCCACTGAAAAGGTGATGGATAAAGCCACATTACTGGCTGAAGTAATTAGACAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTATCTCATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGAGATGGACCCATGTCTTATATGGCAACTATCTGCTGTGATTACAGACCTGAGATACTATCAGACATAAGACAGACACTCAATGCCCTTCAATTACAATTGGTAAAGGCAGAGATATCAACATTGGAAGGTAGAATGAAGAATGTGTTTGTCTTTACATGTTGCAAAAAGGAAAATGTTAATATTGAGGCATGTCAAGCTCTTGCAAGTAATGTTCACCAGGCACTAGATTCTGTGCTGGAAAAGGCTTCTAACTCAATGGAGTTCTCACTCAGAACGTCTCATGCAAGCAAGCGGAGAAGGCTATGCTTTTTTGAAACATCTACTTCCTCATTCAACCATGAATCTTGTTCATTCTGA 810 0.4099 MVYSFCDKSSLSGYDGFNTTLHNLGTSNGVLRGGLSSSHSLVFESEKGELVKCPSTAKVGKNEISEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKVMDKATLLAEVIRQVKELKKNAMEASKGYLIPMDADEVKVEPYDDEGGDGPMSYMATICCDYRPEILSDIRQTLNALQLQLVKAEISTLEGRMKNVFVFTCCKKENVNIEACQALASNVHQALDSVLEKASNSMEFSLRTSHASKRRRLCFFETSTSSFNHESCSF. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04618 269 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Seca12g04618 269 Coils Coil 111 131 - -
Seca12g04618 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 124 IPR036638 GO:0046983
Seca12g04618 269 Coils Coil 170 190 - -
Seca12g04618 269 Gene3D - 67 131 IPR036638 GO:0046983
Seca12g04618 269 CDD ACT_UUR-ACR-like 160 203 - -
Seca12g04618 269 PANTHER TRANSCRIPTION FACTOR BHLH30 29 256 IPR045847 GO:0003700|GO:0006355
Seca12g04618 269 SMART finulus 77 127 IPR011598 GO:0046983
Seca12g04618 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04618 Seca-Chr12 125789331 125793234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04618 13 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.532 3.34e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g04618 HLH 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04618 - - gmx:100804756 402.134