Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04614 ATGATGCTCAAAGAAACCTTCATTTTCCTAGCACTACTTTTATTACTATACAAATATGGTCCCATTCTCTACTTCGACATAACCTCACACACACCCAAGCTATACACCGATTCTTGCGGACTCATATTCAACAAACCCTCAGGTACAGGCCTTTTTGGTCGCAGCTGCAATGATCCCAGTTACGAGCTTCTTTGTGATGAAAACAACAAAATAGTATTGTACTTAAACTATGGCAGGCACTTTGTGCAAGCCATTACTTCATTCAACAATAATGGCACCCTCAAATTCATGATTGGTGGACTTGACAACAATAATTGCTCCAAAATCACTCTTTCTCCTTTCACATACAGTTCTGAACAAGAAAACAAACTAGCCACCGACAATAACATATATTATTATGATGACATAGTATTGGTCAGCTGCAAGAAGAACCTTCCTAGTTCATTTCCTTATGCAAGTGGAGCCACGGAGAGGCCTTATTCTTATGTTCTGCCACGGTATGCAAAGGTATCTGATGTGGGTGAGTCATGTAGTGTGGACTTGATGATAAGGGTGTTGCCTTGGGGACCAGTGACATGCAATAAGAACCGCTCTTATCCAGAGATACAGAGTGAGGAGGTGAATGGGATTCTGCTTAAATGGCGAGCCAACCGTTGTGGGGAGTGGGATGGTGGGGATGGAAGTTGCTTCTTGGACAACACCACCAACATGGTCTTCTGCAATTCCAAAGCAGGGATTTTGGCAAGTGTTTTAAACTTTCTTGGAGAAGGGCTCAATGCTGGAGTTATGATCATCCCAATTTATAGCTTATTCTCATGGTTTGCATTAAGAACTGTACTCGGTCCCCCATTTGTGGTTGCATTCTTGATTTATAAATGGAAAAGGAGGGATCAATCTGCGTGTGATGAAGTTGAGGATTTCCTCCAAAATCATAGCAATTTGATACCTATCAAGTACTCTTACTCTGACATAAAGAAAATGACCAAAGGTTTCAAGCACAAGCTAGGTGAAGGAGGCTATGGTTATGTCTATAAAGGGAAGCTTCGAAGTAAACGTGATGTTGCTGTGAAATTATTATGCAAATCCAAACCAAATGAACAACAATTCATTAATGAAGTTGCCACTATTGGGAAAATTCGTCACACCAATGTGGTGCATTTAATTGGATTTTGTGCAGAAAGAACCAAGCGTGCTCTTGTTTATGAGTACATGCCTAATGGTTCTCTTGACAAGCACATATTCTCACAACAACAGGGGAATAATATGTCCATAAGCTATGAGAAAATCTTTAATATCTCTCTTGGGGTGGCTCATGGAATCCAATACTTACATGAAGGTTGTGATATGCATATTCTACATTTTGATATCAAACCTCACAACATTCTTCTTGATGAGAATTTTAATCCAAAGATCTCTGATTTTGGATTGGCAAAGTTATATCCAATAGATGATGATAGCATTGTATCTCTAACAGTGGCAAGAGGAACAATGGGATACATGGCACCTGAATTGCTATACAAAAATATTGGAGGTGTTTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTATTGATGGAAATGGCAGGTAGAAGGAAGAACTTAAATGCTATGGAGTATTCTTGGCAGACTTATTTTTCTAAATGGGTTTATGATCAATTTGAGGAAACTATAGATTTGGGTAATGCCACAGAAGAGGAAAAGGTGATAGCAAAGAAGATGATAATTATAGGTTTACATTGCATACAAATGAACCCAAATGATCGTCCTTCAATGAATGAGGTAATAAAGATGCTTGAAGGAGAATCTGAGTTCCAAGATGTTCTTCCACCCGAACCTCTGTTTGCAAGGGAAGCCAATAGATGA 1866 0.3912 MMLKETFIFLALLLLLYKYGPILYFDITSHTPKLYTDSCGLIFNKPSGTGLFGRSCNDPSYELLCDENNKIVLYLNYGRHFVQAITSFNNNGTLKFMIGGLDNNNCSKITLSPFTYSSEQENKLATDNNIYYYDDIVLVSCKKNLPSSFPYASGATERPYSYVLPRYAKVSDVGESCSVDLMIRVLPWGPVTCNKNRSYPEIQSEEVNGILLKWRANRCGEWDGGDGSCFLDNTTNMVFCNSKAGILASVLNFLGEGLNAGVMIIPIYSLFSWFALRTVLGPPFVVAFLIYKWKRRDQSACDEVEDFLQNHSNLIPIKYSYSDIKKMTKGFKHKLGEGGYGYVYKGKLRSKRDVAVKLLCKSKPNEQQFINEVATIGKIRHTNVVHLIGFCAERTKRALVYEYMPNGSLDKHIFSQQQGNNMSISYEKIFNISLGVAHGIQYLHEGCDMHILHFDIKPHNILLDENFNPKISDFGLAKLYPIDDDSIVSLTVARGTMGYMAPELLYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNAMEYSWQTYFSKWVYDQFEETIDLGNATEEEKVIAKKMIIIGLHCIQMNPNDRPSMNEVIKMLEGESEFQDVLPPEPLFAREANR. 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04614 621 FunFam serine/threonine-protein kinase PBS1-like 297 403 - -
Seca12g04614 621 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Seca12g04614 621 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Seca12g04614 621 FunFam PR5-like receptor kinase 404 610 - -
Seca12g04614 621 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04614 621 SMART serkin_6 329 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04614 621 Gene3D Transferase(Phosphotransferase) domain 1 404 608 - -
Seca12g04614 621 Pfam Protein kinase domain 332 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04614 621 SUPERFAMILY Protein kinase-like (PK-like) 311 600 IPR011009 -
Seca12g04614 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Seca12g04614 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 299 613 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04614 Seca-Chr12 125708901 125712720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04614 318 615 Receptor kinase-like Gene Family AT5G38280 52.427 3.93e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca12g04614 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04614 - - tpra:123914142 568.155