Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04611 ATGCAATCAACATATCTCAATTTCCAGAAGGGTTCCTCTTCAGCACAAGTACTTCAGCTTACCAGATGTGTTGTTCATAGAGATATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCCAAGTTATGTGATTTCAGATTAGCTACATGGACTTCTGCGCCTTCTGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGTCGGAAGCCAATTGAAGCGAGAAGGTCTCCCGGAGAGGAGAACTTGGTCTTATGGGTGAGTTAA 366 0.4044 MQSTYLNFQKGSSSAQVLQLTRCVVHRDIKPSNILLSSKKTPKLCDFRLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSPGEENLVLWVS. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04611 121 Gene3D Transferase(Phosphotransferase) domain 1 12 121 - -
Seca12g04611 121 Pfam Protein kinase domain 22 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04611 121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Seca12g04611 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04611 121 PANTHER OS08G0249100 PROTEIN 21 120 IPR046958 -
Seca12g04611 121 SUPERFAMILY Protein kinase-like (PK-like) 22 108 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04611 Seca-Chr12 125692319 125693145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04611 24 120 Trihelix Transcription Factor Family AT1G70460 51.546 2.82e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g04611 Pkinase 3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04611 - - cave:132182670 200.675