Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04606 ATGTCTACAATCTTAAACTTACTCATATTGTTGTTACTTGCTACTTCCTCCACCGCTCAACACCACCACCACCGCCGTGTCCTTCACCAACCACTATTCCCAAAAATCTCTGTTCCTCCAGTACAACCACCAGCTTCCTCTCCTGAAACCCAACCCAAACCACAAAAACAACAACCCAAGCTTCCATTTTCTTCATCATCATCTTCGTCCTCGTCTACTCCACCACAAAAGCCTTTCTTCCCTTCTTATCACTCTCCACCACTCCCTCCTTCACCAACCGTCTTTGCAACATTCCCAGCTAACATCTCTTCCTTACTCCTCCCTCGAACCTACTCCCATAACCACCACCACGCCGCCGCTGTCGCCGTTTCCCTCTCTCTCCTCTCATTAGCCCTTCTCGCTGCCGGCGCCGCCTTCTCCTACCACCGCCGGCGCCGCAGTCACCTCACTTCCTCCTCCGGCGCCGATGACGACAAGGCTTCAAGATCGGACAGTCTCCGGCTATTCCCGCCGAACACCGCCACCTCCGACGGCGGCGAACGGAAGCCTCGCAGCAAGCCAAGCCCGAGGTCGGAGCTACTCTACCTCGGCACGGTGGCAGGCTCAGAGGAAGCCGCGGACTCGAGCTGCAGCGGCAATGGGGATTTCCGGCCACCTTACCGGAAACTTGGAGACTCGCCGGAGCTTAATCCACTACCTCCACTGCCACGTCAAAACTTCAGGGCTTGGACGAGTGTGGATTATGATGAAGGAAGAAAGGAAGAGGAAGGTGAAGAAGAAGAAGAAGAAGAGGAGGAGCAGTTTTTCTCTCCAAGAGGGTCTTCTGGGAACAGAAAACAGAGTCCTCCTTCACCTGCTGCACTTGCTGCATCAAGCTCTCGTTCTGCTTTTGATAAATTTGGGAGCAGAAGCTTCACTTCAAGAACCCCATCTTACCCTCGTTCTAATTCTCTTTCTAGTTCAGTTTCTCGTTCCCCTTCTTTGAATTTGAGCCCAGGAAGCATTCCCAACAACCCTGCATCCCCACCTTTCTCTTCTACCCCTTCTTCTCCGAAGCCAATGAGGGAGGACTTGAGTTCGAGTTGGGAGGGAAAGAATTCTTCTCAGACCACCACCAAACTGCCTCCTCCGCCACCGCCTCCACCGCCAAGGCGGTTTTGGGAGACTCCCGTTGTGGCTAGATTGGGTGAACCCTCGCAGCAAAATATTGATGGGGTTGGTGTTAAGAATGAGAATGAAGAGACCCCAAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTTAAGGCCAGCTCAGATAGGGCCATGGTTTGGGATCGGTTGAGACCAAGTTCTTTCCAGTTGAATGAGGACATGATTGAGACACTCTTCATGGTAAATAATTCCAATGGAAATTCTGGTTTGGCTTTTAGAGATAATGCTCGGCGTCAAGTAAATCATTCTTCTCCAATGCCACCGGAAAATAGGGTGCTTGACCCTAAAAAGTCTCAGAACATTGCCATTTTGCTTCGGGCACTGAATGTAACTATTGATGAAGTTTGTGAAGCCCTCAGGGAAGGTGATGATAAATCACTATCTATTTTGTCCTCCATGGAACTGAATCTACCCCTAAGATTAAAATAA 1623 0.5028 MSTILNLLILLLLATSSTAQHHHHRRVLHQPLFPKISVPPVQPPASSPETQPKPQKQQPKLPFSSSSSSSSSTPPQKPFFPSYHSPPLPPSPTVFATFPANISSLLLPRTYSHNHHHAAAVAVSLSLLSLALLAAGAAFSYHRRRRSHLTSSSGADDDKASRSDSLRLFPPNTATSDGGERKPRSKPSPRSELLYLGTVAGSEEAADSSCSGNGDFRPPYRKLGDSPELNPLPPLPRQNFRAWTSVDYDEGRKEEEGEEEEEEEEEQFFSPRGSSGNRKQSPPSPAALAASSSRSAFDKFGSRSFTSRTPSYPRSNSLSSSVSRSPSLNLSPGSIPNNPASPPFSSTPSSPKPMREDLSSSWEGKNSSQTTTKLPPPPPPPPPRRFWETPVVARLGEPSQQNIDGVGVKNENEETPKPKLKALHWDKVKASSDRAMVWDRLRPSSFQLNEDMIETLFMVNNSNGNSGLAFRDNARRQVNHSSPMPPENRVLDPKKSQNIAILLRALNVTIDEVCEALREGDDKSLSILSSMELNLPLRLK. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04606 540 Gene3D Formin, FH2 domain 406 534 IPR042201 -
Seca12g04606 540 PANTHER FORMIN-RELATED 9 528 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca12g04606 540 MobiDBLite consensus disorder prediction 252 267 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 143 192 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 204 387 - -
Seca12g04606 540 SUPERFAMILY Formin homology 2 domain (FH2 domain) 375 527 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 51 78 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 38 85 - -
Seca12g04606 540 ProSiteProfiles Formin homology-2 (FH2) domain profile. 410 540 IPR015425 -
Seca12g04606 540 Pfam Formin Homology 2 Domain 412 526 IPR015425 -
Seca12g04606 540 MobiDBLite consensus disorder prediction 350 371 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 270 335 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 149 164 - -
Seca12g04606 540 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04606 Seca-Chr12 125660104 125662027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04606 15 525 FH2 protein (formin) Gene Family AT2G43800 35.456 2.73e-55 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04606 - - gmx:100786203 471.47