Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04601 ATGACTCCATCCGAGAGCGAAAGCAAGAAGAAGAAGCATCGCAGTCGCAAACATGAAGAAAGTGAAGGACAAGAAGAAGCCAAGGAGCAGCAGAAAGAGGACCTCTTCATGATCAAACCTCAGAAGTTTACAACCCCAATCGACACCTCCCAATGGCCCATTCTCCTCAAAAACTACGAGCGCCTCAACGTACGCACTGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCACTCACTGAGTACCTCAAGTACGGTGTCCTCAACCTTGACAAGCCCGCTAACCCTTCTTCCCATGAGGTTGTCGCTTGGATCAAACGGATCCTCCGTGTCGAAAAAACCGGTCACAGCGGCACCCTCGACCCCAAAGTCACTGGAAACCTCATTGTCTGCATTGACAGAGCCACCCGCTTGGTCAAGTCCCAACAGGGTGCTGGCAAAGAGTACGTTTGTGTTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTTGCTCGCGCCCTCGAGACCCTCACCGGTGCCGTGTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGCCAGCTCAGGATCAGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCATTTGGTTGTTTTTTGGATTTCCTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTGCTTGGTGTGGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTCTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTCGGGATTGCTGAGATGACTACTGCTGTGATGGCAACTTGTGATCATGGTGTGGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCTTCCATGAAGAAGAAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTGCCCACTGGTGGGGATAGCATGATTGCAGGTATGGCTGCTGCGGATGAACCTGAAAAGGCCAAGAAAGAGACTTTTGTAAAAGTGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACGAAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGCGAAAGTTGAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAGCTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAAAATGGTGAAGTTGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGCATAAGGAAAAGGTTGAAGAGGGTTCTCCAGAGTTAGACAAATCTGAGAAGAAAAAGAAGAAGAAAGACAAAGACACTGAAGATAATGCTGCTGAAATTAGTAACGGAAAGGATGACAATAAAGCGGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCAAGGAAGAATAG 1785 0.4745 MTPSESESKKKKHRSRKHEESEGQEEAKEQQKEDLFMIKPQKFTTPIDTSQWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMIAEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGMAAADEPEKAKKETFVKVGEKDADGEGRKRKKHESTDSPVSLPAKKAKVEVEVVEKQETVKLKKVNDEAVEVEVEKKEKKKKKKKDKENGEVASSDEEKAEKKKKKHKEKVEEGSPELDKSEKKKKKKDKDTEDNAAEISNGKDDNKADRSEKKHKKKKNKDAKEE. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04601 594 Pfam TruB family pseudouridylate synthase (N terminal domain) 110 226 IPR002501 GO:0006396
Seca12g04601 594 CDD PseudoU_synth_hDyskerin 88 270 - -
Seca12g04601 594 SMART DKCLD_2 48 106 IPR012960 -
Seca12g04601 594 Pfam PUA domain 297 369 IPR002478 GO:0003723
Seca12g04601 594 MobiDBLite consensus disorder prediction 432 594 - -
Seca12g04601 594 MobiDBLite consensus disorder prediction 476 579 - -
Seca12g04601 594 CDD PUA_Cbf5 295 369 - -
Seca12g04601 594 SUPERFAMILY PUA domain-like 296 377 IPR015947 -
Seca12g04601 594 SUPERFAMILY Pseudouridine synthase 49 294 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca12g04601 594 Pfam DKCLD (NUC011) domain 49 106 IPR012960 -
Seca12g04601 594 Pfam tRNA pseudouridylate synthase B C-terminal domain 227 293 IPR032819 -
Seca12g04601 594 Coils Coil 490 517 - -
Seca12g04601 594 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g04601 594 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 56 381 IPR004802 GO:0006396
Seca12g04601 594 MobiDBLite consensus disorder prediction 433 467 - -
Seca12g04601 594 Gene3D Pseudouridine synthase 82 288 - -
Seca12g04601 594 Gene3D PUA domain 49 380 IPR036974 GO:0003723
Seca12g04601 594 ProSiteProfiles PUA domain profile. 296 371 - -
Seca12g04601 594 Coils Coil 574 594 - -
Seca12g04601 594 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 538 IPR004802 GO:0006396
Seca12g04601 594 NCBIfam uncharacterized domain 2 291 368 IPR004521 GO:0003723
Seca12g04601 594 MobiDBLite consensus disorder prediction 17 32 - -
Seca12g04601 594 FunFam H/ACA ribonucleoprotein complex subunit CBF5 82 288 - -
Seca12g04601 594 SMART pua_5 297 371 IPR002478 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04601 Seca-Chr12 125571358 125573142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04601 6 511 NAC Transcription Factor Family AT3G57150 76.482 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04601 K11131 - gmx:100806355 871.307