Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04596 ATGGAAGGAGGAGGAGATGCTCCACCTGCTGACACCGTCATGTCGGATGCGGCGCCTCCGCCTCAGCCGGACCCTCAACAACAGCATCAGCAGCAGCCGGCGGTGTCCATGGGGATCGAGAATATTCCGGCAACCCTTAGCCACGGTGGCAAGTTCATTCAGTACAACATATTCGGTAACATATTCGAAGTAACCGCGAAATACAAGCCCCCTATCATGCCCATAGGAAAAGGAGCTTACGGTATCGTCTGTTCGGCTCTGAATTCGGAGACGAATGAGCATGTTGCCATCAAGAAGATTGCCAATGCATTTGACAACAAAATTGATGCCAAGAGGACCCTCCGTGAAATCAAGCTGCTTCGCCACATGGATCATGAAAACGTGGTCGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGGTGTTCAATGATGTTTACATTGCATATGAGCTAATGGACACTGACCTTCACCAAATCATTCGATCTAATCAAGCATTATCAGAGGAACACTGTCAGGTCTTGAAAGAAAAATTTGATAATTTTTCTCATGATTTATTTTTGTTTGCAGAGTTATTAGATCTTATCCTTGACACCAATAGAAACCTTTTTTTTCTGGTGCAGTATTTTCTCTATCAAATCCTTCGTGGGTTGAAGTACATACATTCTGCAAATGTGCTGCATAGGGACTTAAAACCTAGCAACCTTCTCCTGAATGCCAACTGTGACTTAAAAATTTGTGATTTTGGACTGGCTCGTGTCACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTAAACTCATCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTATTTCCTGGCAGAGATCATGTGCATCAGTTGCGTCTATTGATGGAGCTGATTGGCACCCCATCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAACTACCTCTTTACCGCCGCCAATCTTTCCAAGAAAAGTTTCCTCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTGACTTTTGATCCCAGACAAAGAATTACTGTTGAAGATGCACTGGCACACCCCTACTTAACATCTCTGCATGATATCAGTGATGAACCTGTGTGCATGACTCCTTTCAGCTTTGACTTTGAACAACATGCTTTGACTGAGGAACAGATGAAAGAACTCATATACCGAGAGGCTCTAGCATTTAACCCTGAGTATCAGCAGTAG 1311 0.4333 MEGGGDAPPADTVMSDAAPPPQPDPQQQHQQQPAVSMGIENIPATLSHGGKFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQALSEEHCQVLKEKFDNFSHDLFLFAELLDLILDTNRNLFFLVQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04596 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Seca12g04596 436 FunFam Mitogen-activated protein kinase 54 163 - -
Seca12g04596 436 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 67 390 - -
Seca12g04596 436 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Seca12g04596 436 SMART serkin_6 69 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04596 436 FunFam Mitogen-activated protein kinase 192 416 - -
Seca12g04596 436 CDD STKc_TEY_MAPK 62 432 - -
Seca12g04596 436 Gene3D Phosphorylase Kinase; domain 1 412 433 - -
Seca12g04596 436 MobiDBLite consensus disorder prediction 1 34 - -
Seca12g04596 436 Pfam Protein kinase domain 74 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04596 436 Gene3D Transferase(Phosphotransferase) domain 1 196 411 - -
Seca12g04596 436 SUPERFAMILY Protein kinase-like (PK-like) 74 397 IPR011009 -
Seca12g04596 436 Gene3D Phosphorylase Kinase; domain 1 45 173 - -
Seca12g04596 436 ProSiteProfiles Protein kinase domain profile. 69 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04596 Seca-Chr12 125543929 125550830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04596 1 436 MAP Kinase Gene Family AT2G43790 79.271 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca12g04596 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04596 K14512 - gmx:100805830 743.806