Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04585 ATGTTCCTTGAAGTCATGAAAGATTTAAAGGCTCAAAGGACTGACATTATTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATTTTGGGATTTAACACTTTCCTTCCAAAGGGGTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAATTGTTGAATTTGAAGAAGATATTACTTTTTAA 207 0.3623 MFLEVMKDLKAQRTDIIGVIARVKELFKGHNNLILGFNTFLPKGYEITLDEDEAPPKKIVEFEEDITF. 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04585 68 ProSiteProfiles PAH domain profile. 1 44 IPR003822 GO:0006355
Seca12g04585 68 PANTHER SIN3B-RELATED 1 68 IPR039774 GO:0003714
Seca12g04585 68 Pfam Paired amphipathic helix repeat 1 41 IPR003822 GO:0006355
Seca12g04585 68 FunFam Paired amphipathic helix protein Sin3 1 42 - -
Seca12g04585 68 SUPERFAMILY PAH2 domain 2 43 IPR036600 GO:0006355
Seca12g04585 68 Gene3D Paired amphipathic helix 1 42 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04585 Seca-Chr12 125198423 125198729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04585 2 55 WRKY Transcription Factor Family AT4G12020 61.818 6.52e-17 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g04585 PAH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04585 K11644 - tcc:18601329 126.331