Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04584 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAGAGGGTTTTCACACACTCCAAGGGAAAGGATTCAGATAATAAAAACACAAAAGAGAAGAAGAAAAGTGTAGGAAAACTAAGGCATGGAGAGACCAATTCTTTCATCCCTCTCTTTAGAGAGCCAAGCAGCATTGAGAAAATCTTTGGGGACTTTGAAAGAGAGCAACAACAACTACAGGTATTAAGGCCTCCCACACCTCCTGAGCAACCCAAAACACCACCTTATGTCCCTCCTAGACCTGCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCATCTCCAAGAGTTGCTTCTCCAAGGGCTCCTTCTCCACGAGTTACCTCTCCCAAAGCTGCATCTTCCCGGATTGTTCATCACCACAAGGAGGTTGGCTACAGACCAGAACCAACTTTAAGGAATCAGCATGCCTCGGCTACTAAGATCCAGGCTGCATACAGGGGTTATATGGCCAGGAGGAGTTTCAGAGCTCTGAAGGGTCTGGTGAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTTAATGCCATGAAGCACATGCAGCTGTTGGTGCGAGTTCAATCTCAGATTCAGTCTAGAAGGATCCAGATGTTGGAAAACCAGGCGCGATATCAAGCTGAGTTCAAGAATGATGCAGCAAGTACCTTGGGCAAACTGACTTTAGGCCAAGCTTCTGAGGCAGGTAACCATGAAGACTGGGATGATAGCTTACTGACAAAAGAAGAAATAGAAGCAAGGTTGCAGAGGAAGGTGGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGTTATGGAAAGCCACTCCAAAATCATCTCAGACACCGGTGACAGACCTGCGATCCAACGGATTTCCATGGTGGTGGAACTGGTTGGAAAGACAACTACCAACCGCAAATCCACAAGAAAGACAAGTCCTGAAGAATTTCCAACTCACACCTCCAAGACCATATTCAGAACAGAAGACTAGTCCAAGACCTCCATCAAGCACTCAAAGACAACAACATTTTGCCTTTGATAACATGGATACACCCACTCCAAAATCCACAAAATCAACTATATTTCCATCTTCAAGACCAACTAGAACTCCTCCATATAGAACTCCACAAGCAAACAGCTCAAGCATGTCAAAACATCCAAGACCAAGGGGTGTTGGAGCCAATTCACCATTTGATGTGCCACTGAAGGATGATGAGAGTCTCACAAGCTGCCCTCCATTTTCAGTGCCAAATTACATGGCTCCAACAGTTTCTGCCAAGGCCAAAGTACGTGCTAGTAGTAATCCAAGAGAAAGGTTTGGTGGTGGTGGTGTTGTTGGGACTCCAACTCCAAGCAGTGATTCAAAAAGGAGGCTTTCATTTCCTTTATCCCAAGGAATTGGTTCCTTTAAATGGACAAAAGGGTCCTTTTTCTCTAGCAAGGATCCTAGCTCTCAGAGGACACCAGATAATAAATTTCAGTCACTTGAATCAATAGGAAACGTGAGTGTGGATTCAACGGTATCATTGCCCGCAAGGGTGGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1605 0.4523 MGKKGSWFSAIKRVFTHSKGKDSDNKNTKEKKKSVGKLRHGETNSFIPLFREPSSIEKIFGDFEREQQQLQVLRPPTPPEQPKTPPYVPPRPASPRPPSPRAPSPRVASPRAPSPRVTSPKAASSRIVHHHKEVGYRPEPTLRNQHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDAASTLGKLTLGQASEAGNHEDWDDSLLTKEEIEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSSQTPVTDLRSNGFPWWWNWLERQLPTANPQERQVLKNFQLTPPRPYSEQKTSPRPPSSTQRQQHFAFDNMDTPTPKSTKSTIFPSSRPTRTPPYRTPQANSSSMSKHPRPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTVSAKAKVRASSNPRERFGGGGVVGTPTPSSDSKRRLSFPLSQGIGSFKWTKGSFFSSKDPSSQRTPDNKFQSLESIGNVSVDSTVSLPARVGRKPFTRFV. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04584 534 Pfam Protein of unknown function (DUF4005) 397 478 IPR025064 -
Seca12g04584 534 Gene3D - 143 196 - -
Seca12g04584 534 ProSiteProfiles IQ motif profile. 145 173 IPR000048 GO:0005515
Seca12g04584 534 SMART iq_5 144 166 IPR000048 GO:0005515
Seca12g04584 534 MobiDBLite consensus disorder prediction 328 415 - -
Seca12g04584 534 MobiDBLite consensus disorder prediction 75 110 - -
Seca12g04584 534 PANTHER IQ-DOMAIN 5-RELATED 1 475 - -
Seca12g04584 534 MobiDBLite consensus disorder prediction 15 39 - -
Seca12g04584 534 MobiDBLite consensus disorder prediction 1 137 - -
Seca12g04584 534 Pfam IQ calmodulin-binding motif 146 166 IPR000048 GO:0005515
Seca12g04584 534 MobiDBLite consensus disorder prediction 443 470 - -
Seca12g04584 534 MobiDBLite consensus disorder prediction 328 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04584 Seca-Chr12 125164925 125170813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04584 1 534 IQD Protein Family AT3G59690 51.579 2.38e-161 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04584 - - gmx:100807777 797.734