Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04578 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTCTCAAGGGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGTCCCTGCTCTGTTGATCAAAGCAGTTATACTTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCCATCAGCACTAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAACGGACTACATAGGCTTCCTTCATAAACAAGTTAAGGTTTGGCCATTCTTGCTACATTACGCTGAAATTACAATGATAAATATCCTAGTAACTGGTTTAATACTTGGACATAAATTAAGTCATGGTGATCTTTGGTCCTGA 405 0.3877 MIASSFCNADSMFSREEGIDVRKMMGHKRSPCSVDQSSYTSIASKKQKADLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEATDYIGFLHKQVKVWPFLLHYAEITMINILVTGLILGHKLSHGDLWS. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04578 134 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 107 IPR036638 GO:0046983
Seca12g04578 134 CDD bHLH_AtbHLH_like 52 101 IPR045239 -
Seca12g04578 134 Gene3D - 43 103 IPR036638 GO:0046983
Seca12g04578 134 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Seca12g04578 134 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 101 - -
Seca12g04578 134 SMART finulus 52 101 IPR011598 GO:0046983
Seca12g04578 134 FunFam Transcription factor bHLH113 family 45 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04578 Seca-Chr12 125013324 125019905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04578 24 107 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 57.471 2.79e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04578 - - vun:114178105 211.846