Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04566 ATGCAAAAGCAGAACTCACACCCACTGCTCAACACAGTTCATGCCAAACTTCTCGCTTTCGATCTCCTCTCCCTCACTCCTTCTTCTTCTTCTTCAGACCCTGTATTCTACCGCAGAGGCATTCCTCTCTCACGCGCAGAAACCCTAGGCACCGTAACTCTAAGGGACCTCAAACCCAACAGGTTCCTCAGGTTCGCTATCGACGACGGCACCGGCTGCATCCCTTGCATCCTCTGGCTCAACCACCTCTCCTCCCCGCACCTCGCACGCCGCCGGAGCCCTCAAGACCTCCGCCTCATTGCCGACTCCGCTGCACGCTCCGCTACGCTGGTGAAGGTGGGAGTGGTGGCGAGAGTGAGGGGCCGAATCACAGCGTATAAGGGTTCCGTGCAGATAACAGTGTCGGATGTTATGCTGGAGAGGGACCCCAATGCGGAGATCCTGCACTGGCTGGAGTCTATCAACTTGGCTCGTAACTGTTACAATCTTTTGCCTCAACAACACTCCTCTGCCTCTGCCGCTCCACCTCCACCCAACTAG 540 0.5667 MQKQNSHPLLNTVHAKLLAFDLLSLTPSSSSSDPVFYRRGIPLSRAETLGTVTLRDLKPNRFLRFAIDDGTGCIPCILWLNHLSSPHLARRRSPQDLRLIADSAARSATLVKVGVVARVRGRITAYKGSVQITVSDVMLERDPNAEILHWLESINLARNCYNLLPQQHSSASAAPPPPN. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04566 179 Pfam OB-fold nucleic acid binding domain 52 138 IPR004365 GO:0003676
Seca12g04566 179 Gene3D - 8 164 IPR012340 -
Seca12g04566 179 PANTHER REPLICATION PROTEIN A-RELATED 10 175 IPR040260 -
Seca12g04566 179 SUPERFAMILY Nucleic acid-binding proteins 30 155 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04566 Seca-Chr12 124672137 124672676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04566 40 156 Core DNA Replication Machinery Family AT2G24490 26.496 1.43e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04566 K23312 - aew:130751254 203.756