Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04561 ATGACGTCTTTAGATGTTGATTGCAAGCCTATGGTTGGTATGGAATTTGATAAAATAGAGGCAGCTTGGCATTTTTGGCTCACATATGGTGCACATACAGGCTTTGGAGTTAGAATGCGATACACAAATAAGAGAAAGGAAGATGGCGCTATTAGTTCATGTAGGTTTGTTTGTTGCAAGGAAGGAGTGCGAACAAACAAGAAAGGAGCTTTGGTTAACAATCATAGAGCTCATACTAGAACTGACTGCAAAGCAAGGATTTCACTTCTATTAAAGAATGAAAAGCGTGTCGTTCATGAGTTTATAGAGGACCATAACCACCCTCTACAACTTCCAGAGACAACACACATGCTTGCATCACACAGAAAGATAAGTGAAGTCCAAGCATATGAGATTGATCTAGCAGAAGACTTTGGATTAAAGCAGAAGGAAGCATTTCAACTTATGAGCACACATGCGGGGCATAGAGCTAATGTTGGATATACACGGTTGGATGTAAAAAACTACCTCAATGCAAGAAGACAAAGAAGCATGGTGTATGGCGAAGCTGGATGTCTTTTGCAATATTTTCAAAGACAATTGTTGGAGAACCCATCTTTCTTCCATGCATTCCAAATGGATATGGATGAACAGATAACAAATGTATTTTGGGCTGATGCAAGTATGTTGTTAGATTATGGATATTTTGGTGATGTTATGTCATTGGACACTACATACTGTACCAACCGTGCAAATAGACCCCTTGCTTTATTTTCTGGTTTCAACCACTATAGGGGTGCGGTCATTTTCGGAGCAGCATTGTTGTATGACGAAACGGCGGAATCATTTAAATGGCTGTTTGAGACATTCTTACAAGCACACAACCAGAAAAAACCTCAGACTATCTTTACTGACCAAGACCAGGCAATGGCTAAGGCACTTGTTGAGGTTATGCCCGAGACTAGACATGGTTTATGTACTTGGCATTTGTTGCAGAATGGAATTTAA 987 0.3992 MTSLDVDCKPMVGMEFDKIEAAWHFWLTYGAHTGFGVRMRYTNKRKEDGAISSCRFVCCKEGVRTNKKGALVNNHRAHTRTDCKARISLLLKNEKRVVHEFIEDHNHPLQLPETTHMLASHRKISEVQAYEIDLAEDFGLKQKEAFQLMSTHAGHRANVGYTRLDVKNYLNARRQRSMVYGEAGCLLQYFQRQLLENPSFFHAFQMDMDEQITNVFWADASMLLDYGYFGDVMSLDTTYCTNRANRPLALFSGFNHYRGAVIFGAALLYDETAESFKWLFETFLQAHNQKKPQTIFTDQDQAMAKALVEVMPETRHGLCTWHLLQNGI. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04561 328 Pfam FAR1 DNA-binding domain 25 110 IPR004330 -
Seca12g04561 328 PANTHER OS01G0519700 PROTEIN 7 326 - -
Seca12g04561 328 Pfam MULE transposase domain 232 326 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04561 Seca-Chr12 124572458 124573444 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04561 MULE 3.4e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04561 - - mtr:112419311 491.5