Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04543 ATGGGTTCGGTTCCTGCAGAACTGAGCTTGGATTTAAGACCTAGTTTCGTTCCCAAAACCATCGCTGATTTCCTCTACGACCTCTCCACCATCCCTGCTTCCTCCGACAAGCTCTCTAGGCTCCACGATTTCCTCTCCCGATTGGAAGACGAGCTCAGGAAGATCGACGCTTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGACGCTATTTTAGTTTTGAAGGAGGAATCAGAAAAATGCAGGGCTCATAATTCTCGGCCAGTGTTGGAAGAGTTTATTCCCTTGAAGAAAGAGCGTGATCAGAGTGAGGGAAATGATAGCAAGGACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAACAACAACACTACCACTAATAATAATAATGCCTCTGATCAAAAACAACATCATAATCATAATAAATTAGAAACCAAGCAGAAAATTGAAGAAGAAAGGCAATCTGTGGCTGAAGACCCTTTTCAATCTTGTAGTAATAGAAATGGAGCAAGTGCTTTTATGCCTTTTTCCACATACCCTTCTGTCCCTGTGACAACAGTGGCACTGGCAACAACCAAAGAAGAGAAGGAAGAAACTGTTATCAATAGACTTTCTCTTCTGACCCCTGCGGTGAAAACTTTGAGGGAAGGATTTGGTGGTTCAAGGGGTTCCAGAACCAATTCCAATAGGGCAGTTTCTTCCTCTCCTCCTACAGTGCAGCCAAGTTTGCGTGCAGGACCACTTCAGCAGCAGCAACAAACAGCTAGGAAACAGAGAAGGTGCTGGTCACCAGAATTGCACCGTAGATTTGTTAATGCATTGCAGAAGCTCGGTGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGAGCTCATGCAGGTTGATGGCCTGACAAATGATGAAGTGAAGAGCCATTTGCAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCAAATTCTAATCAATCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAATACAATGACTCTTCAAAGGGTAGCAGTTCAGGGTCTGGTTCTCCACAAAGTCCCCTTCATTTAGCAACAGGATCAAGGGGAGGGACATCCCCAACTGAGGGTGAAAGCATGGAAGATGATGAAGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCACATTCAGAAAGCTGGAAAAGTTGATGTATAG 1224 0.4395 MGSVPAELSLDLRPSFVPKTIADFLYDLSTIPASSDKLSRLHDFLSRLEDELRKIDAFKRELPLCMFLLNDAILVLKEESEKCRAHNSRPVLEEFIPLKKERDQSEGNDSKDNECRDKKNWMSSVQLWNNNTTTNNNNASDQKQHHNHNKLETKQKIEEERQSVAEDPFQSCSNRNGASAFMPFSTYPSVPVTTVALATTKEEKEETVINRLSLLTPAVKTLREGFGGSRGSRTNSNRAVSSSPPTVQPSLRAGPLQQQQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAANSNQSVVVLGGLWMSQDQYNDSSKGSSSGSGSPQSPLHLATGSRGGTSPTEGESMEDDEDEKSESYSWKSHIQKAGKVDV. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04543 407 SUPERFAMILY Homeodomain-like 262 323 IPR009057 -
Seca12g04543 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 265 320 IPR006447 GO:0003677
Seca12g04543 407 MobiDBLite consensus disorder prediction 223 270 - -
Seca12g04543 407 Gene3D - 264 322 - -
Seca12g04543 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 322 IPR017930 -
Seca12g04543 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 397 IPR044787 GO:0003700|GO:0006355
Seca12g04543 407 MobiDBLite consensus disorder prediction 129 151 - -
Seca12g04543 407 MobiDBLite consensus disorder prediction 346 407 - -
Seca12g04543 407 FunFam Myb family transcription factor 264 322 - -
Seca12g04543 407 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Seca12g04543 407 MobiDBLite consensus disorder prediction 389 407 - -
Seca12g04543 407 MobiDBLite consensus disorder prediction 228 267 - -
Seca12g04543 407 MobiDBLite consensus disorder prediction 346 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04543 Seca-Chr12 124000938 124003743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04543 6 341 G2-like Transcription Factor Family AT2G03500 42.286 2.80e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g04543 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04543 - - mtr:25493035 570.852