Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04531 ATGATCCAAGGAGGTGATATTTCTGCTGGAGATGGTACTGGAGGAGAATCCATTTATGGACTTAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGCATGTTATCAATGGCAAACTCTGGTCCCAATACAAATGGGTCTCAGTTTTTTATCACCACTACCCGAACTTCTCATCTAGATGGCAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCGATAGAGCATGTTACCACCGGAGAACAGGATCGTCCCACTCTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGGATATCTAACTTTTTCAAAGATGGTGATACTTACCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTAATGAACTTGACTGGTGGATGAAATCTGTTGACTCAATCAAAACTTTTGGCAATGAGTATTACAAAAAACAAGACTACAAAATGGCTCTAAGGAAGTATAGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAAGAAGGGATTGATGAAGAGAAAAGTTTAGGTTTGAGAAAAACGAAGTCTCAGATATTTACAAACAGCTCTGCTTGTAAATTGAAATTAGGGGATCTTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGATGGAGAGAATAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCTTACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTAACCTTAGAGCCAAATGATGCTGGAATAAAAAAGGAACTTGCTGCTGCCAGGAAGAAGATAGCTGATAGGCGTGATCAAGAGAAAAAAGCATATAGCAAGATGTTCCAATAA 882 0.4014 MIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEQDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNELDWWMKSVDSIKTFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSLGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGENNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADRRDQEKKAYSKMFQ. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04531 293 Pfam Tetratricopeptide repeat 230 263 IPR001440 GO:0005515
Seca12g04531 293 SUPERFAMILY TPR-like 140 291 IPR011990 GO:0005515
Seca12g04531 293 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 103 IPR002130 GO:0000413|GO:0003755
Seca12g04531 293 Gene3D - 1 111 IPR029000 -
Seca12g04531 293 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 104 IPR002130 GO:0000413|GO:0003755
Seca12g04531 293 FunFam peptidyl-prolyl cis-trans isomerase D 142 293 - -
Seca12g04531 293 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Seca12g04531 293 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Seca12g04531 293 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Seca12g04531 293 SMART tpr_5 230 263 IPR019734 GO:0005515
Seca12g04531 293 SMART tpr_5 144 177 IPR019734 GO:0005515
Seca12g04531 293 Gene3D Tetratricopeptide repeat domain 144 293 IPR011990 GO:0005515
Seca12g04531 293 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 105 - -
Seca12g04531 293 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Seca12g04531 293 SUPERFAMILY Cyclophilin-like 1 107 IPR029000 -
Seca12g04531 293 ProSiteProfiles TPR repeat region circular profile. 230 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04531 Seca-Chr12 123742376 123746763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04531 1 101 U-box Gene Family AT5G67530 51.961 1.88e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04531 K05864 - gmx:100804110 548.51