Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04528 ATGGGGGTTTGCACTTCGAAGCCGGAGAAGCCCAACCCATATGCACTTAGGGAACCGGAAAGTGACCCTTCGCAAATCCCGAAAACCCCACTGAGTCCTGACGCCAACAACCACCGCCGGAAAGATGACGTCATCGCCGGAAAACAGTCTCCGTTCTTCCCGTTCTACAGTCCCAGTCCAGCTCGCTTTCTTAAGAAGTCTCCGTCGCCGGCGGGGAGCGCGAGCTCGACTCCGAGGAGGTTTTTCCGGCGACCTTTCCCTCCGCCGTCTCCGGCGAAGCACATAAGGGCTGTGTTGGCTAGGAGACAGGGGAAGAAGACGGCAGCGATACCGGAAGAGGCGGAGGCGGCGACCGGAGGTGCGGCGGATTTGGATAAGAGGTTTGGGTTCTCGAAGGAGTTCACTAGTAGGTTGGAAGTAGGGGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAACTTAAGGGTCAACAAGTGGCTGTTAAGGTCATTCCAAAAGCAAAGATGACAACAGCCATTGCAATTGAAGATGTGAGAAGGGAGGTGAAAATATTGAAAGCTTTGAATGGGCACAGCAATCTGGTAAAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAATTATGTGAAGGGGGCGAGCTTTTAGATATGATACTATCAAGAGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGAGTGGTGCACCGAGATCTCAAGCCTGAGGAATTCTTGGATATGGATTTCAATTTGGATATCATTTCTTATTGTCTAACCCCCTTGCATTTTTCCATTCAGAATTTTTTGTACATTTCAAAGGATGAAAGTTCTGAGTTAAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAAGCTTAATGACATCGTTGGAAGTGCGTACTATGTGGCCCCTGAAGTTCTCCATAGGTCTTACAGCACAGAGGCTGATGTATGGAGTATAGGCGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAAGCTTTGATGAAGCTCCCTGGCCATCTTTATCTTCAGAAGCTAAAGATTTTGTCAAACGCCTACTGAATAAGGACCCAAGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATAATGTGAAAGTTCCACTTGATATTTTAATATTTAAGCTTATGAAGGTTTATATGAGATCATCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACTGCTGATGAACTCTATTATCTGAGGGAACAATTTGCATTGTTGGAACCTAGCAAAAATGGCAGCATATCCTTAGACAACGTTAGCAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGCGTCCCTGAATTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCTGCTACATTAAGCGTGCATCAACTTGAAGCACTGGATCGTTGGGAACAACATGCCCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTTATTGAAGAACTTGCTTCAGAACTTGGACTCGGTCCTTCAATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGGTTTGTCAAATTATTACATGGTGCATCTAGCCGAAGCCTTGCAAAGGTTCAGTGA 1851 0.4462 MGVCTSKPEKPNPYALREPESDPSQIPKTPLSPDANNHRRKDDVIAGKQSPFFPFYSPSPARFLKKSPSPAGSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKTAAIPEEAEAATGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILKALNGHSNLVKFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPEEFLDMDFNLDIISYCLTPLHFSIQNFLYISKDESSELKAIDFGLSDFVRPDEKLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKVYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLDNVSKALMKYATDAMKESRVPEFLSSLNSLQYRRMDFEEFCAATLSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGASSRSLAKVQ. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04528 616 Gene3D - 449 603 - -
Seca12g04528 616 FunFam CDPK-related kinase 1 460 533 - -
Seca12g04528 616 PANTHER SERINE/THREONINE-PROTEIN KINASE 123 591 - -
Seca12g04528 616 Gene3D Transferase(Phosphotransferase) domain 1 228 441 - -
Seca12g04528 616 ProSiteProfiles Protein kinase domain profile. 138 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04528 616 FunFam CDPK-related kinase 1 131 226 - -
Seca12g04528 616 Gene3D - 442 533 - -
Seca12g04528 616 Pfam Protein kinase domain 139 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04528 616 SUPERFAMILY EF-hand 452 606 IPR011992 -
Seca12g04528 616 CDD STKc_CAMK 139 423 - -
Seca12g04528 616 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Seca12g04528 616 FunFam CDPK-related kinase 3 130 292 - -
Seca12g04528 616 MobiDBLite consensus disorder prediction 1 92 - -
Seca12g04528 616 SUPERFAMILY Protein kinase-like (PK-like) 134 459 IPR011009 -
Seca12g04528 616 Gene3D Phosphorylase Kinase; domain 1 140 227 - -
Seca12g04528 616 FunFam - 295 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04528 Seca-Chr12 123669696 123675616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04528 1 612 EF-hand Containing Proteins AT3G50530 69.335 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca12g04528 Pkinase 7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04528 - - gmx:100798913 1039.64