Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04521 ATGGCTGATGATCTCTCTTCCTTCGCCAAGGATGTTTTGCTTGTGAAGGGTTTGAAGAATTCTACGTTGGTGTGGAGGTTGGTTGTGTTGACCTTTGCAATGGTCTGTGGTGTGTATATATGTTCTATTTGTCTGAAGCAGATAGGCACTAGCAGCAAGATTGGTTTTCTAGATATCAAGGTTGTGCAAAAGCCATGCCCAGAACCTAACATTGAACCTTGGGAGATTCCTTATGTGCATTACCCAAATCCCAAAACTTACAGCAGGGAGGAGTGTACTTGTCACCCTGTGCGCTATTTTGCTATTCTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACTTTTTTGAATAGTCATCCTAACATAAGCTCAAATGGGGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAATATGTCAACAATAACAGAGACTCTGGATACAATTTATAATCTAGACTGGTTAAGTAGTGCTTCAAAAAATGAGTGCACGGCTGCAGTTGGCTTGAAGTGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCCGAGTACTTCAGAATACATGGTGTTTCAGTCTTATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGATTTCTGTACTTGCAAATGAATATGATAGGAATGCCAAGCTATTAAATGGGACTCACAAATCTCATGTTCATTCACCCAAGGAGGCAGAAATACTTGCAAAATACAAGCCAAAAATCAATTCAACATTGCTGATTGCAAACCTGAAGCAAGTGAATGACACCACCACCAAGGCTTTGGAATACTTCAAGAGCACTAGGCACATTATCTTATACTACGAAGATGTTGTCAAAAACCGCACTAAATTAAGGGACGTACAGGATTTTCTGAAAGTTCCACAAATGGATTTAAAGAGTCGTCAAGTGAAGATACATAAAGGATCCTTATCCAGCCATGTTGAAAATTGGGATGAAGTAAGCAAGGCACTCACTGGGACACCATATGAGAATTACCTTCGTGAAGATTACCGTAGATTTATGCAGGTTGTATCGGCCAAGGTCATACGAAATAAGCAAACCGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCACGAGCAACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACTATGATGCCAAATACAGATCAGGCATTTCGTCTGAATTGGGCTACATTCAGTGCAGGTGATAGGCGGACTGATGCTACTTCTGATCTCTCTATATTTGTGGGAGACCTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACCTTTGCTAGCAGATTTTCATCTATTAAGGGAGCCAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTACGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGAGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCACAAGCTGTGGTGTTGGCTGGTGGACACTCTAATGGTGCTGTGGCCCAAGGTTCCCAGCCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTAAAATTTGGTGATGTTGTCTCAGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAAGAGGCAATTCAGGCATTGAATGGAACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGATATGCTGCGAGACACAATCAGGATATAGGTATGCATCCTGCTGCTGCTGCTGTTCAAGGGGCTTCGTAA 1956 0.4213 MADDLSSFAKDVLLVKGLKNSTLVWRLVVLTFAMVCGVYICSICLKQIGTSSKIGFLDIKVVQKPCPEPNIEPWEIPYVHYPNPKTYSREECTCHPVRYFAILSMQRSGSGWFETFLNSHPNISSNGEIFSVKVRRSNMSTITETLDTIYNLDWLSSASKNECTAAVGLKWMLNQGLMQHHEQIAEYFRIHGVSVLFLFRRNLLRRMISVLANEYDRNAKLLNGTHKSHVHSPKEAEILAKYKPKINSTLLIANLKQVNDTTTKALEYFKSTRHIILYYEDVVKNRTKLRDVQDFLKVPQMDLKSRQVKIHKGSLSSHVENWDEVSKALTGTPYENYLREDYRRFMQVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRTDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSNGAVAQGSQPEGDSNNTTIFVGGLDSDISDEDLRQPFLKFGDVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHGYAARHNQDIGMHPAAAAVQGAS. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04521 651 SUPERFAMILY RNA-binding domain, RBD 415 605 IPR035979 GO:0003676
Seca12g04521 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 535 598 IPR000504 GO:0003723
Seca12g04521 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 391 IPR000504 GO:0003723
Seca12g04521 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 486 IPR000504 GO:0003723
Seca12g04521 651 SUPERFAMILY RNA-binding domain, RBD 335 403 IPR035979 GO:0003676
Seca12g04521 651 CDD RRM2_SECp43_like 414 493 - -
Seca12g04521 651 SMART rrm1_1 416 490 IPR000504 GO:0003723
Seca12g04521 651 SMART rrm1_1 534 601 IPR000504 GO:0003723
Seca12g04521 651 SMART rrm1_1 309 398 IPR000504 GO:0003723
Seca12g04521 651 FunFam Polyadenylate-binding protein RBP47B 403 505 - -
Seca12g04521 651 Gene3D - 328 401 IPR012677 -
Seca12g04521 651 Gene3D - 512 639 IPR012677 -
Seca12g04521 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 533 605 IPR000504 GO:0003723
Seca12g04521 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 494 IPR000504 GO:0003723
Seca12g04521 651 Gene3D - 97 327 IPR027417 -
Seca12g04521 651 CDD RRM3_NGR1_NAM8_like 532 603 - -
Seca12g04521 651 CDD RRM1_SECp43_like 335 403 - -
Seca12g04521 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 402 IPR000504 GO:0003723
Seca12g04521 651 FunFam Polyadenylate-binding protein RBP47 515 631 - -
Seca12g04521 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 299 IPR027417 -
Seca12g04521 651 Gene3D - 402 505 IPR012677 -
Seca12g04521 651 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 7 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04521 Seca-Chr12 123451643 123468231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04521 416 598 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 6.41e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04521 - - gmx:100799665 649.047