Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04493 ATGTCCTCCTCCTCCTTCTCCCCCGCCACCCTCACCACCGAACAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGTTCCACCTCCACCTCTTCCTCCGTCATCGCCAACTCCATACCTGAATTTCACCTGCCAGATCCCGCCGCCGGGAGCAGTTTCGCGAACATGGAGACTTGCCGTGAATGCAACATCGCTGGGTGCTTGGGTTGCAACTTTTTCCCCGAAGAGAATAATAATAATAACAACAATAATAAGAAAAAACAGAAGAGGGCTAAGAAGAAATACAGAGGCGTGAGACAGAGGCCTTGGGGTAAATGGGCCGCGGAGATTCGTGACCCAAGGCGCGCGGCCCGGGTCTGGCTCGGAACCTTTAACACAGCGGAAGAAGCAGCTATGGCTTACGACAAAGCCGCTATCGAGTTCCGTGGGCCTCGGGCCAAGCTCAATTTCCCGCTCGTCGATGAGTCTCTGAGTATGCAGCACGCGGAGCCAGAGTCGACGGTGGTTGCTAATTCAGAGCATAATAATATAAAGGTTGAGAATATGAATCAGGAAATGGAATTTGGGAACAAGGACAGTGAATTCTGGGACAGAATTGCCGAAGCTGATTTGCAGCTCATGATGATGGATTTTGGTGGAGATAATTCTTCTGACTCTGCTACTGGGAACACTCTTAGTATGTAA 696 0.5158 MSSSSFSPATLTTEQELSVIVAALTNVVAGSTSTSSSVIANSIPEFHLPDPAAGSSFANMETCRECNIAGCLGCNFFPEENNNNNNNNKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAAMAYDKAAIEFRGPRAKLNFPLVDESLSMQHAEPESTVVANSEHNNIKVENMNQEMEFGNKDSEFWDRIAEADLQLMMMDFGGDNSSDSATGNTLSM. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04493 231 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Seca12g04493 231 CDD AP2 99 155 IPR001471 GO:0003700|GO:0006355
Seca12g04493 231 Gene3D AP2/ERF domain 97 157 IPR036955 GO:0003700|GO:0006355
Seca12g04493 231 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Seca12g04493 231 PANTHER DNA-BINDING DOMAIN 58 178 IPR044808 GO:0003700|GO:0009873
Seca12g04493 231 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Seca12g04493 231 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Seca12g04493 231 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Seca12g04493 231 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Seca12g04493 231 MobiDBLite consensus disorder prediction 80 100 - -
Seca12g04493 231 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04493 Seca-Chr12 122357125 122357820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04493 11 163 AP2-EREBP Transcription Factor Family AT4G34410 45.503 1.85e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca12g04493 AP2 6.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04493 - - gsj:114420690 304.293